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The map label for this gene is ytdP [H]

Identifier: 52140676

GI number: 52140676

Start: 4662754

End: 4663983

Strand: Direct

Name: ytdP [H]

Synonym: BCZK4578

Alternate gene names: 52140676

Gene position: 4662754-4663983 (Clockwise)

Preceding gene: 52140681

Following gene: 52140674

Centisome position: 87.96

GC content: 30.81

Gene sequence:

>1230_bases
ATGAATAATTGTATCGACATACAGCACTTATGCGACCTTGTACATAGTACTTTTCATGTACCCGTTCAATTCTTATCTAC
TAATAAAAAAATTGTATATGAATCTACTTCTCATACGATTGGTAGTCCTTTTTATACTTCTAAAGAAGAACATCTGAATG
AACTTTATCAAGAAAATGCTCCTTGTAATTTTCCAATTTTCAAAGGGAATAAGTACCTTGAGAATTTCATTAGCATTCAT
ATAACTGATCATGAACATATAAAAGGAACAATTATACTCGGGCCTACTACTTATCCAAAAGTATCAGATGAAATGGCTAT
TAAACTTATGAAGTATTTCAACTGTAATCATAAAATGCAGCAAGGAATAGACTACTATCAATTTCTACCAGAGATTAAAA
AAAGTACGCTAATTGATATAAGTATTTGGTTACATTACGTCATTTTCAATGAAAAATTAGATCGCGATATTGTTTGGAAA
AAAAATAAATTGCTCGAAGATGTTTCTTATAAAATCGTAAATCCTGATTTATACATTTCAAAACGTCGCCGGCATGACCC
GCAAAATTATGACATATCATTGGAACGTAAATTTTTTTCAGCCATTAAAGAAGGCAATAAAGAAAAGGTCATACAATATG
CCTATTCCTTCCCACAAGAAGACGCAGCAATTTCATCTAAAGGAGATCAACTGAGAAACCAAAAAAATAACGGTATTATC
GCTATTACACTAGCTACTCGATATGCGATAGATGGTAATCTCCCATCACATATTGCTTTTTCACTCGGCACTTTATATAT
CCAAACCATTGAAAAGCTAGACAACATGTATTCCGTAAATAGATTAATTGAAGATGCATTATGTACTTTTGCAGAACGTG
TAAAAGAATATAATAATCAAGCATATTCTAATGCCATTACTACATGTCTAAATCATATTCACAAACATATTTACGATGAA
ATAACTCTTAATGACCTTGCTAACCTTTTACATATTTCCCCTACTTATTTATCAAAATTATTTAAAAAAGAAGTGGGAAT
TCCTTTAAGTGAATATATCCAGAGGGAACGAGTAGAAGAAGCAAAAAAATTATTAACATTAACGACTTATCCACTATCAG
ATATTTGTGCCTGGCTCAACTTTAATGATCAAAGCTATTTCACGAGAGTTTTCAAAAAAATCACTAACATGACTCCTAGA
CAATATCGTGAAAATCATACTGTTATATAA

Upstream 100 bases:

>100_bases
TTTTGTATAAGCAAAGAAATTCCAATAATAAGAAATTTATATTTTGTAGAAACGAATGTAGATTTAAATATATTTCAAAA
CGATTTAAAAGGAGAAGATC

Downstream 100 bases:

>100_bases
AAACGCTTTCTTAATAGAGGGTGAGATAGTTGCCATACTTGCTCACCTTCCTCGATTTGATTTCCTCTCCTTCATCCAAA
ATAAAGTTTTAATCCTCTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNNCIDIQHLCDLVHSTFHVPVQFLSTNKKIVYESTSHTIGSPFYTSKEEHLNELYQENAPCNFPIFKGNKYLENFISIH
ITDHEHIKGTIILGPTTYPKVSDEMAIKLMKYFNCNHKMQQGIDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWK
KNKLLEDVSYKIVNPDLYISKRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
AITLATRYAIDGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYNNQAYSNAITTCLNHIHKHIYDE
ITLNDLANLLHISPTYLSKLFKKEVGIPLSEYIQRERVEEAKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITNMTPR
QYRENHTVI

Sequences:

>Translated_409_residues
MNNCIDIQHLCDLVHSTFHVPVQFLSTNKKIVYESTSHTIGSPFYTSKEEHLNELYQENAPCNFPIFKGNKYLENFISIH
ITDHEHIKGTIILGPTTYPKVSDEMAIKLMKYFNCNHKMQQGIDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWK
KNKLLEDVSYKIVNPDLYISKRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
AITLATRYAIDGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYNNQAYSNAITTCLNHIHKHIYDE
ITLNDLANLLHISPTYLSKLFKKEVGIPLSEYIQRERVEEAKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITNMTPR
QYRENHTVI
>Mature_409_residues
MNNCIDIQHLCDLVHSTFHVPVQFLSTNKKIVYESTSHTIGSPFYTSKEEHLNELYQENAPCNFPIFKGNKYLENFISIH
ITDHEHIKGTIILGPTTYPKVSDEMAIKLMKYFNCNHKMQQGIDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWK
KNKLLEDVSYKIVNPDLYISKRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
AITLATRYAIDGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYNNQAYSNAITTCLNHIHKHIYDE
ITLNDLANLLHISPTYLSKLFKKEVGIPLSEYIQRERVEEAKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITNMTPR
QYRENHTVI

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=139, Percent_Identity=28.7769784172662, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790391, Length=96, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47876; Mature: 47876

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNCIDIQHLCDLVHSTFHVPVQFLSTNKKIVYESTSHTIGSPFYTSKEEHLNELYQENA
CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PCNFPIFKGNKYLENFISIHITDHEHIKGTIILGPTTYPKVSDEMAIKLMKYFNCNHKMQ
CCCCEEECCCHHHHHCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHH
QGIDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWKKNKLLEDVSYKIVNPDLYIS
HCCHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCEEE
KRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
HHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCEE
AITLATRYAIDGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYNNQ
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AYSNAITTCLNHIHKHIYDEITLNDLANLLHISPTYLSKLFKKEVGIPLSEYIQRERVEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITNMTPRQYRENHTVI
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCC
>Mature Secondary Structure
MNNCIDIQHLCDLVHSTFHVPVQFLSTNKKIVYESTSHTIGSPFYTSKEEHLNELYQENA
CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PCNFPIFKGNKYLENFISIHITDHEHIKGTIILGPTTYPKVSDEMAIKLMKYFNCNHKMQ
CCCCEEECCCHHHHHCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHH
QGIDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWKKNKLLEDVSYKIVNPDLYIS
HCCHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCEEE
KRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
HHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCEE
AITLATRYAIDGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYNNQ
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AYSNAITTCLNHIHKHIYDEITLNDLANLLHISPTYLSKLFKKEVGIPLSEYIQRERVEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITNMTPRQYRENHTVI
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]