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The map label for this gene is yobU [H]

Identifier: 52140596

GI number: 52140596

Start: 4767942

End: 4768418

Strand: Direct

Name: yobU [H]

Synonym: BCZK4660

Alternate gene names: 52140596

Gene position: 4767942-4768418 (Clockwise)

Preceding gene: 52140597

Following gene: 52140595

Centisome position: 89.95

GC content: 38.36

Gene sequence:

>477_bases
ATGAAAGAACCTATCATCGTAAAAAAAGAAGCTTTCCAAGCAATCGGCATTTCGATTACGACGACCAACGAAAAAGAGGC
ATCTACTGAAGGAAAAATTCCCGGGCTTTGGAACCGGTACTTCCAAGAACAAATCATGCACCACATTCCAAATCAACAAA
CGAAAGAAACATTCGCTTTCTACTCAAATTACGAATCAGATGAAACGGGTACATATAAATACACAATTGGCATGCCTGTT
TCTTCATTAGAAGACGTTCCTGAAAATATGACAACTTTAACAATACCTGCCGCTACGTATGCGGTATTTACAACGAGAAA
GGGACCAATTGCTGAAGTCGTTTGCGAGGCTTGGGAATATATTTGGAAATGGTCAAAGGAAAACAAACGTGCTTTTACAA
CAGACTTTGAGCTTTATGATGAAAGAGCATTAGATCCAACCAACGTACAATTGGATATTTATATTGCATTAGCCTAA

Upstream 100 bases:

>100_bases
TGTATCATTAAAATTTTTAAAAAATAGTAACCGTTATATGTAAAAATATGTTACATTAAATAAGAACAAACGTTCTATAT
AATAAGGGGGATATTTTAAA

Downstream 100 bases:

>100_bases
ACGACAAAAAAGAAGATACCAAATGGTATCTTCTTTTTTGTCTTTAAATAGCCACTGTGCAAATCCAACATAATTGTCTA
CAATGAGAAAGTGCAGTATA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYESDETGTYKYTIGMPV
SSLEDVPENMTTLTIPAATYAVFTTRKGPIAEVVCEAWEYIWKWSKENKRAFTTDFELYDERALDPTNVQLDIYIALA

Sequences:

>Translated_158_residues
MKEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYESDETGTYKYTIGMPV
SSLEDVPENMTTLTIPAATYAVFTTRKGPIAEVVCEAWEYIWKWSKENKRAFTTDFELYDERALDPTNVQLDIYIALA
>Mature_158_residues
MKEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYESDETGTYKYTIGMPV
SSLEDVPENMTTLTIPAATYAVFTTRKGPIAEVVCEAWEYIWKWSKENKRAFTTDFELYDERALDPTNVQLDIYIALA

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 18195; Mature: 18195

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAF
CCCCEEEHHHHHHEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
YSNYESDETGTYKYTIGMPVSSLEDVPENMTTLTIPAATYAVFTTRKGPIAEVVCEAWEY
HCCCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHH
IWKWSKENKRAFTTDFELYDERALDPTNVQLDIYIALA
HHHCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MKEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAF
CCCCEEEHHHHHHEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
YSNYESDETGTYKYTIGMPVSSLEDVPENMTTLTIPAATYAVFTTRKGPIAEVVCEAWEY
HCCCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHH
IWKWSKENKRAFTTDFELYDERALDPTNVQLDIYIALA
HHHCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]