The gene/protein map for NC_006177 is currently unavailable.
Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is 51894399

Identifier: 51894399

GI number: 51894399

Start: 3485194

End: 3486501

Strand: Reverse

Name: 51894399

Synonym: STH3265

Alternate gene names: NA

Gene position: 3486501-3485194 (Counterclockwise)

Preceding gene: 51894400

Following gene: 51894398

Centisome position: 97.77

GC content: 67.74

Gene sequence:

>1308_bases
ATGGGGTTCGGCGCGTACCAGACCCGCCTGAAGAACCAGTACCTGCGGGAAGCGGAAAACAAGTACATGGCGGCGTTCCA
CAAGCTGAAGTGGACCAGCGAGAACATCGAGGAGCGCATGGCCAAGCTGATGGCGACCAACGACCCCAGGCTCCAGGAGA
GCCTGCTGGCCGACCTCCGGGTGTTCAGCGCGCAGGCCGTGGAGCACATGGCGACGCTGCCGTTCACGACCATGAACACG
CCCCGCATCACCAACTTCCTGAACACCCTGCGGGCGCAGTCCGACGAGAAGCACCACAAGCTGAACACGGGTCAGGGCCT
GACCGACGAGGACTGGAATCAGCTCATGGAGCTGCGCCACCAGGCGGTCTACTTCGAACAGGAGCTGTCCAACCTGCTGG
GCCTGGTGGGGAACAACCTGATCCGCTGGCAGCCCACCGTGCAGGCGACCAGCCCGGCCCAGAGCGGCCAGGCCTCGACG
CCCATCACCAAGTCCGTGATGCTCCTGGAGGAGAACCTGCCCGTGCCGCCCGGGGAGGAGAACGCCCTGGCGCCCGAGAA
GGCGCAGCTGCCGCGGCCGCAGACGGATCCTGGCCCGCGGGTGGACGCCGCGGCCGCCGCGGAGGCGATCAAGCGCTTTG
TGGACATGCCGCTGGCCGGCGAGCCGGTGCAGACGGGGGTGTACGACCCGGAGGACACCGAGAAGGGGCTTTCCCTCTAC
TACTTTGATGCCCGGAAGCAGAACGGACTGCCCATGAACTTCGGGGTTTCGGTGCACGGCGGCCACGTGGTCTACATGAT
CGACGGCCGGGCCGTCACCGAGAAAAAGCTGTCCCACGAGGAGCTGATCGCGAAGGCGAAGGAGTTGCTGGCCAAATGGG
GCTTTGATCAGGTGGCCCTGGTCTCCAGCGCCGAGAACGACGGTACCCTGGTGATGGATTTCGCCCCCGTCGCCGGCGGC
GTCGCCGTCCACACCGAGATGATCCGGGTCATGCTGGCCATGGACAACGGCGAGCTGGTGGGCTACGACGCCCGGGCCTA
CTGGGTGAACCACGTGGAACGGGACCTGCCGGCGCCGCAGATCGCGGCGGCGGAGGCGGCCGCCCGCACGTCGCCCCGGC
TGACGGTGACGGGAGAGCCGCGCCTGGCGCTCATCGCCGACCGGCGCGGGCAGGAGCGGCTGGTCTGGGAGGTGCCGGGC
CGCGTGGAGGACCAGTATTTCCGGGTCTTCGTGGACGCCATGGACGGCACGGAGGTGGACCTGATTCGTTCCGTCGGCGA
CCCCGCTCCGCCGATGCAGGAAGGGTAG

Upstream 100 bases:

>100_bases
CGGTAAGCACATCTTCGCGAAGTAGGGGGTCGGAGCCGTGAGGTCGCAGCGAGGCCAGGTGTGGGCGTACCTGCTGCTGG
CGGTGGCTTTGGTGGGCGCG

Downstream 100 bases:

>100_bases
TACCCGCCGTCCGGCCGGTCATAGGGAGGGCTGTCCCCTTGTGCGGGGACAGCCCTTCGCGCGCCCCGGGGAGTCCGGCC
GAACCACAGGCACGCAGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MGFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLRVFSAQAVEHMATLPFTTMNT
PRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRHQAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQAST
PITKSVMLLEENLPVPPGEENALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY
YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVALVSSAENDGTLVMDFAPVAGG
VAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQIAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPG
RVEDQYFRVFVDAMDGTEVDLIRSVGDPAPPMQEG

Sequences:

>Translated_435_residues
MGFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLRVFSAQAVEHMATLPFTTMNT
PRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRHQAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQAST
PITKSVMLLEENLPVPPGEENALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY
YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVALVSSAENDGTLVMDFAPVAGG
VAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQIAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPG
RVEDQYFRVFVDAMDGTEVDLIRSVGDPAPPMQEG
>Mature_434_residues
GFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLRVFSAQAVEHMATLPFTTMNTP
RITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRHQAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQASTP
ITKSVMLLEENLPVPPGEENALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLYY
FDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVALVSSAENDGTLVMDFAPVAGGV
AVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQIAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPGR
VEDQYFRVFVDAMDGTEVDLIRSVGDPAPPMQEG

Specific function: Required for spore cortex hydrolysis during germination. Appears to be required for either expression, localization, activation or function of sleB [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ypeB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005075
- InterPro:   IPR014239 [H]

Pfam domain/function: PF03413 PepSY [H]

EC number: NA

Molecular weight: Translated: 48244; Mature: 48113

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VFSAQAVEHMATLPFTTMNTPRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRH
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
QAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQASTPITKSVMLLEENLPVPPGEE
HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHEEEECCCCCCCCCC
NALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY
CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVAL
EEECCCCCCCCEEECEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
VSSAENDGTLVMDFAPVAGGVAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQ
EECCCCCCEEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEECHHHHHHHHHHHCCCCCH
IAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPGRVEDQYFRVFVDAMDGTEVD
HHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHH
LIRSVGDPAPPMQEG
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
GFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VFSAQAVEHMATLPFTTMNTPRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRH
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
QAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQASTPITKSVMLLEENLPVPPGEE
HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHEEEECCCCCCCCCC
NALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY
CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVAL
EEECCCCCCCCEEECEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
VSSAENDGTLVMDFAPVAGGVAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQ
EECCCCCCEEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEECHHHHHHHHHHHCCCCCH
IAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPGRVEDQYFRVFVDAMDGTEVD
HHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHH
LIRSVGDPAPPMQEG
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10484179; 11058132 [H]