| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is 51894399
Identifier: 51894399
GI number: 51894399
Start: 3485194
End: 3486501
Strand: Reverse
Name: 51894399
Synonym: STH3265
Alternate gene names: NA
Gene position: 3486501-3485194 (Counterclockwise)
Preceding gene: 51894400
Following gene: 51894398
Centisome position: 97.77
GC content: 67.74
Gene sequence:
>1308_bases ATGGGGTTCGGCGCGTACCAGACCCGCCTGAAGAACCAGTACCTGCGGGAAGCGGAAAACAAGTACATGGCGGCGTTCCA CAAGCTGAAGTGGACCAGCGAGAACATCGAGGAGCGCATGGCCAAGCTGATGGCGACCAACGACCCCAGGCTCCAGGAGA GCCTGCTGGCCGACCTCCGGGTGTTCAGCGCGCAGGCCGTGGAGCACATGGCGACGCTGCCGTTCACGACCATGAACACG CCCCGCATCACCAACTTCCTGAACACCCTGCGGGCGCAGTCCGACGAGAAGCACCACAAGCTGAACACGGGTCAGGGCCT GACCGACGAGGACTGGAATCAGCTCATGGAGCTGCGCCACCAGGCGGTCTACTTCGAACAGGAGCTGTCCAACCTGCTGG GCCTGGTGGGGAACAACCTGATCCGCTGGCAGCCCACCGTGCAGGCGACCAGCCCGGCCCAGAGCGGCCAGGCCTCGACG CCCATCACCAAGTCCGTGATGCTCCTGGAGGAGAACCTGCCCGTGCCGCCCGGGGAGGAGAACGCCCTGGCGCCCGAGAA GGCGCAGCTGCCGCGGCCGCAGACGGATCCTGGCCCGCGGGTGGACGCCGCGGCCGCCGCGGAGGCGATCAAGCGCTTTG TGGACATGCCGCTGGCCGGCGAGCCGGTGCAGACGGGGGTGTACGACCCGGAGGACACCGAGAAGGGGCTTTCCCTCTAC TACTTTGATGCCCGGAAGCAGAACGGACTGCCCATGAACTTCGGGGTTTCGGTGCACGGCGGCCACGTGGTCTACATGAT CGACGGCCGGGCCGTCACCGAGAAAAAGCTGTCCCACGAGGAGCTGATCGCGAAGGCGAAGGAGTTGCTGGCCAAATGGG GCTTTGATCAGGTGGCCCTGGTCTCCAGCGCCGAGAACGACGGTACCCTGGTGATGGATTTCGCCCCCGTCGCCGGCGGC GTCGCCGTCCACACCGAGATGATCCGGGTCATGCTGGCCATGGACAACGGCGAGCTGGTGGGCTACGACGCCCGGGCCTA CTGGGTGAACCACGTGGAACGGGACCTGCCGGCGCCGCAGATCGCGGCGGCGGAGGCGGCCGCCCGCACGTCGCCCCGGC TGACGGTGACGGGAGAGCCGCGCCTGGCGCTCATCGCCGACCGGCGCGGGCAGGAGCGGCTGGTCTGGGAGGTGCCGGGC CGCGTGGAGGACCAGTATTTCCGGGTCTTCGTGGACGCCATGGACGGCACGGAGGTGGACCTGATTCGTTCCGTCGGCGA CCCCGCTCCGCCGATGCAGGAAGGGTAG
Upstream 100 bases:
>100_bases CGGTAAGCACATCTTCGCGAAGTAGGGGGTCGGAGCCGTGAGGTCGCAGCGAGGCCAGGTGTGGGCGTACCTGCTGCTGG CGGTGGCTTTGGTGGGCGCG
Downstream 100 bases:
>100_bases TACCCGCCGTCCGGCCGGTCATAGGGAGGGCTGTCCCCTTGTGCGGGGACAGCCCTTCGCGCGCCCCGGGGAGTCCGGCC GAACCACAGGCACGCAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MGFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLRVFSAQAVEHMATLPFTTMNT PRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRHQAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQAST PITKSVMLLEENLPVPPGEENALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVALVSSAENDGTLVMDFAPVAGG VAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQIAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPG RVEDQYFRVFVDAMDGTEVDLIRSVGDPAPPMQEG
Sequences:
>Translated_435_residues MGFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLRVFSAQAVEHMATLPFTTMNT PRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRHQAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQAST PITKSVMLLEENLPVPPGEENALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVALVSSAENDGTLVMDFAPVAGG VAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQIAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPG RVEDQYFRVFVDAMDGTEVDLIRSVGDPAPPMQEG >Mature_434_residues GFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLRVFSAQAVEHMATLPFTTMNTP RITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRHQAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQASTP ITKSVMLLEENLPVPPGEENALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLYY FDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVALVSSAENDGTLVMDFAPVAGGV AVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQIAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPGR VEDQYFRVFVDAMDGTEVDLIRSVGDPAPPMQEG
Specific function: Required for spore cortex hydrolysis during germination. Appears to be required for either expression, localization, activation or function of sleB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ypeB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005075 - InterPro: IPR014239 [H]
Pfam domain/function: PF03413 PepSY [H]
EC number: NA
Molecular weight: Translated: 48244; Mature: 48113
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH VFSAQAVEHMATLPFTTMNTPRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHH QAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQASTPITKSVMLLEENLPVPPGEE HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHEEEECCCCCCCCCC NALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVAL EEECCCCCCCCEEECEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCCEEE VSSAENDGTLVMDFAPVAGGVAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQ EECCCCCCEEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEECHHHHHHHHHHHCCCCCH IAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPGRVEDQYFRVFVDAMDGTEVD HHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHH LIRSVGDPAPPMQEG HHHHCCCCCCCCCCC >Mature Secondary Structure GFGAYQTRLKNQYLREAENKYMAAFHKLKWTSENIEERMAKLMATNDPRLQESLLADLR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH VFSAQAVEHMATLPFTTMNTPRITNFLNTLRAQSDEKHHKLNTGQGLTDEDWNQLMELRH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHH QAVYFEQELSNLLGLVGNNLIRWQPTVQATSPAQSGQASTPITKSVMLLEENLPVPPGEE HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHEEEECCCCCCCCCC NALAPEKAQLPRPQTDPGPRVDAAAAAEAIKRFVDMPLAGEPVQTGVYDPEDTEKGLSLY CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE YFDARKQNGLPMNFGVSVHGGHVVYMIDGRAVTEKKLSHEELIAKAKELLAKWGFDQVAL EEECCCCCCCCEEECEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCCEEE VSSAENDGTLVMDFAPVAGGVAVHTEMIRVMLAMDNGELVGYDARAYWVNHVERDLPAPQ EECCCCCCEEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEECHHHHHHHHHHHCCCCCH IAAAEAAARTSPRLTVTGEPRLALIADRRGQERLVWEVPGRVEDQYFRVFVDAMDGTEVD HHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHH LIRSVGDPAPPMQEG HHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10484179; 11058132 [H]