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The map label for this gene is rpoA

Identifier: 51894182

GI number: 51894182

Start: 3260310

End: 3261257

Strand: Reverse

Name: rpoA

Synonym: STH3047

Alternate gene names: 51894182

Gene position: 3261257-3260310 (Counterclockwise)

Preceding gene: 51894183

Following gene: 51894181

Centisome position: 91.45

GC content: 62.34

Gene sequence:

>948_bases
ATGATCGGAATGGAAAAGCCCAAGATTGAGACCGTGGTGCTGGCGGAGGACAACAGCTACGGCAAGTTCGTGGTGGAGCC
TCTGGAGCGCGGCTACGGCATCACCCTTGGCAACTCCCTGCGGCGGATCCTGCTCTCTTCCCTGCCGGGCGCCGCAGTCA
CCTCTGTGAAGATCGACGGCGTGCTGCATGAGTTTTCCACGCTCCCCGGTGTGGTCGAGGACGTCACGGATATCATCCTC
AACCTCAAGCAGCTCTCGCTCCGGATGCACAGCGACGAACCGAAGGTCCTGCGCCTCCACGCGGAGGGCGAGGGCGAGGT
CACCGCGGGGGACATTCATACGGACGCCGATGTGGAGATCCTCAACCCGGACCTGCACATCGCCACCCTGGACAAGGGCG
GCCGGCTCATCGCCGAGATCACCGTCAGCAAGGGGCGGGGCTACGTGCCGGCCGACCAGAACAAGACCCCGGACATGCCC
ATCGGCGTGATCCCCGTCGACTCGATCTTCTCCCCGATCCGTCGGGTGAACTACACCATCGAGCACACCCGCGTCGGCAA
CAAGACCAACTACGATAAGCTCACCCTGGAGGTCTGGACCAACGGGGCCATCCGGCCCGACGAGGCCTGCTCCTGGGCGG
CGAAGATCCTCAAGGAGCACCTGGAGCTCTTCATCTCGCTCACCGAGGACGCCGACGAGATCGAGGTCATGCAGGAGAAG
GAAGACGACGAGCGGAACAAGCTGATGGAGATGACCATCGAAGAGCTGGATCTCTCCGTTCGTTCGTACAACTGCCTGAA
GCGGGCGGGCATCAACACCATCGCGGAGCTGGTCTCCAAGACCGACGAAGAGATGATGAAGGTCCGCAACCTGGGCAAGA
AGTCGCTGGAAGAGGTCAAGACCAAGCTGGCGGCCTTCGGCCTTTCGCTGCGGCAACCTGATGACTAG

Upstream 100 bases:

>100_bases
GACTGTGGCACTGGCCGCAGCTGGTGGGCAGAGCTGGGTTCTTGGGCGGTGGCGTAGGGCGCTCACATGAGTGAGACAGG
GAATTGGGGGTATCTACCAG

Downstream 100 bases:

>100_bases
CCCCGAGGCGCTTTCGATCTGGACAGGATAGGGGTGAACCAAGGAAAATGGCCAAATATCAGAAGCTCGGCCGGGACAGC
TCGGCCCGCAAGGCCTTGTT

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIGMEKPKIETVVLAEDNSYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIDGVLHEFSTLPGVVEDVTDIIL
NLKQLSLRMHSDEPKVLRLHAEGEGEVTAGDIHTDADVEILNPDLHIATLDKGGRLIAEITVSKGRGYVPADQNKTPDMP
IGVIPVDSIFSPIRRVNYTIEHTRVGNKTNYDKLTLEVWTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK
EDDERNKLMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKVRNLGKKSLEEVKTKLAAFGLSLRQPDD

Sequences:

>Translated_315_residues
MIGMEKPKIETVVLAEDNSYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIDGVLHEFSTLPGVVEDVTDIIL
NLKQLSLRMHSDEPKVLRLHAEGEGEVTAGDIHTDADVEILNPDLHIATLDKGGRLIAEITVSKGRGYVPADQNKTPDMP
IGVIPVDSIFSPIRRVNYTIEHTRVGNKTNYDKLTLEVWTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK
EDDERNKLMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKVRNLGKKSLEEVKTKLAAFGLSLRQPDD
>Mature_315_residues
MIGMEKPKIETVVLAEDNSYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIDGVLHEFSTLPGVVEDVTDIIL
NLKQLSLRMHSDEPKVLRLHAEGEGEVTAGDIHTDADVEILNPDLHIATLDKGGRLIAEITVSKGRGYVPADQNKTPDMP
IGVIPVDSIFSPIRRVNYTIEHTRVGNKTNYDKLTLEVWTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK
EDDERNKLMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKVRNLGKKSLEEVKTKLAAFGLSLRQPDD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family

Homologues:

Organism=Escherichia coli, GI1789690, Length=297, Percent_Identity=48.1481481481481, Blast_Score=256, Evalue=1e-69,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): RPOA_SYMTH (Q67JX1)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_076873.1
- ProteinModelPortal:   Q67JX1
- GeneID:   2979359
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH3047
- NMPDR:   fig|292459.1.peg.2919
- HOGENOM:   HBG430844
- OMA:   FGTTLGN
- ProtClustDB:   PRK05182
- BioCyc:   STHE292459:STH3047-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00059
- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR011260
- InterPro:   IPR011773
- Gene3D:   G3DSA:2.170.120.12
- ProDom:   PD001179
- SMART:   SM00662
- TIGRFAMs:   TIGR02027

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L; SSF47789 RNAP_alpha_C; SSF56553 RNAP_insert; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 35031; Mature: 35031

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGMEKPKIETVVLAEDNSYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIDG
CCCCCCCCEEEEEEECCCCCCCEEEEHHHCCCCEEHHHHHHHHHHHHCCCCEEEEEEHHH
VLHEFSTLPGVVEDVTDIILNLKQLSLRMHSDEPKVLRLHAEGEGEVTAGDIHTDADVEI
HHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCCEEECCCCCCCCEEE
LNPDLHIATLDKGGRLIAEITVSKGRGYVPADQNKTPDMPIGVIPVDSIFSPIRRVNYTI
ECCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCEEE
EHTRVGNKTNYDKLTLEVWTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK
EEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHHHC
EDDERNKLMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKVRNLGKKSLEEVK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TKLAAFGLSLRQPDD
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MIGMEKPKIETVVLAEDNSYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIDG
CCCCCCCCEEEEEEECCCCCCCEEEEHHHCCCCEEHHHHHHHHHHHHCCCCEEEEEEHHH
VLHEFSTLPGVVEDVTDIILNLKQLSLRMHSDEPKVLRLHAEGEGEVTAGDIHTDADVEI
HHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCCEEECCCCCCCCEEE
LNPDLHIATLDKGGRLIAEITVSKGRGYVPADQNKTPDMPIGVIPVDSIFSPIRRVNYTI
ECCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCEEE
EHTRVGNKTNYDKLTLEVWTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK
EEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHHHC
EDDERNKLMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKVRNLGKKSLEEVK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TKLAAFGLSLRQPDD
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA