| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893526
Identifier: 51893526
GI number: 51893526
Start: 2571677
End: 2572159
Strand: Reverse
Name: 51893526
Synonym: STH2388
Alternate gene names: NA
Gene position: 2572159-2571677 (Counterclockwise)
Preceding gene: 51893527
Following gene: 51893525
Centisome position: 72.13
GC content: 70.19
Gene sequence:
>483_bases GTGTCCAGGGCCAGGGACCTGATCGGGCTGTCGGTGCTGGCAAGTCCCGACATGCGGCCGGTGGGGCGGGTACAGGAGGT GCTGATCAGCCGCGACGGGCGGCGCATCCGTGGGCTGGTGCTGGAGACCGGCGGACTGCTCAGCCGCCGCCGGGTACTGG ACTACCAGGGTGTCAAGGCAGTGGGTTCGACGTATGTGCTGGCAGAGGAGCGGTACCTGGAGGACGAGGCGGAGACCCGG TGCGGGTCGGCCCTGACCGGTCTGCCCGTGCTGGACGGCTCGGGCGAGGAGCTGGGCATGCTCGACGACCTGCACTTCGA ACCCAGCACGGGGGAGATCCACGCTCTGCAACTCTCGCGCGGCTTCGTGGACGATCTGCTGAGCGGCAAGGCGATCGTGC CCCTGAACGGGCCGGCGGTCACCGGCGAAGGGGCGATCCTGCTGGACGCGGTGGCGGAGCGCGAAGGGGGGCTGTGGACG TGA
Upstream 100 bases:
>100_bases TACCGGCAAACTTCCTGGTTTATCCCTGGGCGGATCGGGGCAGACTGGCATTCGTAACAGGATGATCCTGAATCTGCGCG AGCGGGGGATCGATGCAGAC
Downstream 100 bases:
>100_bases GGTGCCCGAACTGTGGTAGCCGCAGTATTGGCCGTGTCGGGGCGGAGCAATACTACTGCTGGGATTGCTGCGTGGAGTTC AACACGGCCCGCGGCGCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSRARDLIGLSVLASPDMRPVGRVQEVLISRDGRRIRGLVLETGGLLSRRRVLDYQGVKAVGSTYVLAEERYLEDEAETR CGSALTGLPVLDGSGEELGMLDDLHFEPSTGEIHALQLSRGFVDDLLSGKAIVPLNGPAVTGEGAILLDAVAEREGGLWT
Sequences:
>Translated_160_residues MSRARDLIGLSVLASPDMRPVGRVQEVLISRDGRRIRGLVLETGGLLSRRRVLDYQGVKAVGSTYVLAEERYLEDEAETR CGSALTGLPVLDGSGEELGMLDDLHFEPSTGEIHALQLSRGFVDDLLSGKAIVPLNGPAVTGEGAILLDAVAEREGGLWT >Mature_159_residues SRARDLIGLSVLASPDMRPVGRVQEVLISRDGRRIRGLVLETGGLLSRRRVLDYQGVKAVGSTYVLAEERYLEDEAETRC GSALTGLPVLDGSGEELGMLDDLHFEPSTGEIHALQLSRGFVDDLLSGKAIVPLNGPAVTGEGAILLDAVAEREGGLWT
Specific function: Unknown
COG id: COG3881
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17126; Mature: 16995
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRARDLIGLSVLASPDMRPVGRVQEVLISRDGRRIRGLVLETGGLLSRRRVLDYQGVKA CCCCHHHHEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCHH VGSTYVLAEERYLEDEAETRCGSALTGLPVLDGSGEELGMLDDLHFEPSTGEIHALQLSR CCCEEEEEHHHHHCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC GFVDDLLSGKAIVPLNGPAVTGEGAILLDAVAEREGGLWT CHHHHHHCCCEEEECCCCEECCCCEEEEEEHHHCCCCCCC >Mature Secondary Structure SRARDLIGLSVLASPDMRPVGRVQEVLISRDGRRIRGLVLETGGLLSRRRVLDYQGVKA CCCHHHHEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCHH VGSTYVLAEERYLEDEAETRCGSALTGLPVLDGSGEELGMLDDLHFEPSTGEIHALQLSR CCCEEEEEHHHHHCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC GFVDDLLSGKAIVPLNGPAVTGEGAILLDAVAEREGGLWT CHHHHHHCCCEEEECCCCEECCCCEEEEEEHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA