| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893433
Identifier: 51893433
GI number: 51893433
Start: 2475664
End: 2477322
Strand: Reverse
Name: 51893433
Synonym: STH2295
Alternate gene names: NA
Gene position: 2477322-2475664 (Counterclockwise)
Preceding gene: 51893440
Following gene: 51893432
Centisome position: 69.47
GC content: 61.42
Gene sequence:
>1659_bases ATGGTGGGAGTGTGGCCGCTCCCAATCCACCATGTGGAGGTTCGACTGATGCAGTCTCATGGTACGACACCCAACATCGC TGCGCAAGCCATCAAGTCCACCACCCGACATGGTTTTCTCGTCGCTCTTGGCTGGGTAGCTCAAAGGCTCAACCTGGTTG AGATCCTGAATCGGCACCTGCGCATCAAGCAGAAGACCTACGCCCACACGCCGGTTGACAAGGTGGTCGAGGCGTTGGTT GCCATTCTCGGCAACTGTCGCTACATGAAGGATCTCAACTTCGACCCTGAGCCGCTGGTTGCCGATCCTGCCGTAGCTCA AGCCTGGGGGCAGGAACGCTTTGCTCACTTTTCCACCGTCTGTGCGACCTTCAGCAAGCTGACGGAGGAGAACGTTCAGC AGCTTTCCGACGCACTCGCTGAGATCCAGGCCCCGCTGCTTCAGCAGGAGGTGGCTGCCGTAGCAGGTCCAGACCGCTCC GGAATGGTCATCGTCGACATTGACCTCACCGGCCAGAAGGTTCGGGGCGAGACCAGGCAGTACACCGGTACCGACTTCGG CTACATCCAGGGGAAGTTGGCCCGAGGCTATCAGATCGCAGCCGCCTTCCTCAGCGGGAAGCAGCAGCGCTTTGCCATCG ACGGCCTTCTCAAGTCCGGCAAGGCCAACAGCCGTTCCGGCGCCTGCCTGCTCGAACTGATTCCCAGGATCGAAGCCCGG ATTGGTCGTCCCCTGCGGCGAGTCGAATGGGTCGAGGCATGCCTGGCTCAGCAGAAGGCTCGGGTCAGGCAGCTGTATCA GCAACTGCAGACGGTATCAGGCAAGGGCAGCGCCCGCCGGAAGCAGAAGCTGCAGCGTGAGTTCCAGGAGGAGGTTCAGC ACCTCCGTGAAGTGAACCAGCGACTCCGGCAGTACCGGCAGGAGAATCGGACGAACCTGGCTCCCCTCCGTATTCTGCTG CGAGCTGACAGCGCCTTTGGCACGCCGGAAGTGATCCAGCGCCTGCTGGAACTGGGGTATGAGTTCACCATCAAGTCCTA CTCCGGAAGCAATCCCGCCTACAAGCGCCTCTTCGACGCCGTGCCGGCGGAGGGCTGGGTTGAAGTCGAGAAGAACCGGT TTGCCTCCGAAGCCGTTACCGTACCTGGCCCCACTTTGCTCGCACCGTATCCGGTGCGACTGGTCGCCATGCGCCGCTGG GACGCCGATGGCCGGGAGGTCCGCAGCGTCATCCTGACTACGCTCCAGCCTGAGGAGCTCACCACGACAGAGGTCGTCAA GCTCTACCATGGACGGCAGACCATCGAAGCCGGGTTCCAGGAGTGGAAGGGAACGTTCCACTTTGGTACTCCTCGGATGC GGAAGTATGAGGCCAACGCCGCCTTCACGCAGCTGGTCTTGTTCGCCTTCAACCTGGTGCGCTGGGCTTGGCGGTTTCTG AGCACGAACTCGCCCAAACTGGCCGAGGCGGGGAGTCGACTCTTGGTACGAGTAGCGGCCCGGTGCCGAGCAACCATTCG GTGCCTCGGCGACACGCTGCGGTTGGTGTTCAGCCGGGGTACTCCCCTGGCTGGAGCTGAGATTACCCTGAACCGGGCCA CTCCCTACCCATACGCCCTTTTAACACCACGAATGTCGAGTTGTTCGCGTGAAACTTGA
Upstream 100 bases:
>100_bases TGGAAGAAACGGGGGCACGCTAGCTCAAGTTTCGCGTGAATAACCCGGACTTCGTGCAATGGAAACCCATTGAAAAAGCA TCAGTCAGAACCAATGATAC
Downstream 100 bases:
>100_bases GCTAGGGACAAGGAAGGGAGGGAGGTGCTTCCGGAGGCCCCGCGGGAGGGGTATTTTATATAAGGGGTGTTCCGGTGAGG CCGGAACATCTCCCCGATCA
Product: transposase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 552; Mature: 552
Protein sequence:
>552_residues MVGVWPLPIHHVEVRLMQSHGTTPNIAAQAIKSTTRHGFLVALGWVAQRLNLVEILNRHLRIKQKTYAHTPVDKVVEALV AILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRS GMVIVDIDLTGQKVRGETRQYTGTDFGYIQGKLARGYQIAAAFLSGKQQRFAIDGLLKSGKANSRSGACLLELIPRIEAR IGRPLRRVEWVEACLAQQKARVRQLYQQLQTVSGKGSARRKQKLQREFQEEVQHLREVNQRLRQYRQENRTNLAPLRILL RADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAEGWVEVEKNRFASEAVTVPGPTLLAPYPVRLVAMRRW DADGREVRSVILTTLQPEELTTTEVVKLYHGRQTIEAGFQEWKGTFHFGTPRMRKYEANAAFTQLVLFAFNLVRWAWRFL STNSPKLAEAGSRLLVRVAARCRATIRCLGDTLRLVFSRGTPLAGAEITLNRATPYPYALLTPRMSSCSRET
Sequences:
>Translated_552_residues MVGVWPLPIHHVEVRLMQSHGTTPNIAAQAIKSTTRHGFLVALGWVAQRLNLVEILNRHLRIKQKTYAHTPVDKVVEALV AILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRS GMVIVDIDLTGQKVRGETRQYTGTDFGYIQGKLARGYQIAAAFLSGKQQRFAIDGLLKSGKANSRSGACLLELIPRIEAR IGRPLRRVEWVEACLAQQKARVRQLYQQLQTVSGKGSARRKQKLQREFQEEVQHLREVNQRLRQYRQENRTNLAPLRILL RADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAEGWVEVEKNRFASEAVTVPGPTLLAPYPVRLVAMRRW DADGREVRSVILTTLQPEELTTTEVVKLYHGRQTIEAGFQEWKGTFHFGTPRMRKYEANAAFTQLVLFAFNLVRWAWRFL STNSPKLAEAGSRLLVRVAARCRATIRCLGDTLRLVFSRGTPLAGAEITLNRATPYPYALLTPRMSSCSRET >Mature_552_residues MVGVWPLPIHHVEVRLMQSHGTTPNIAAQAIKSTTRHGFLVALGWVAQRLNLVEILNRHLRIKQKTYAHTPVDKVVEALV AILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRS GMVIVDIDLTGQKVRGETRQYTGTDFGYIQGKLARGYQIAAAFLSGKQQRFAIDGLLKSGKANSRSGACLLELIPRIEAR IGRPLRRVEWVEACLAQQKARVRQLYQQLQTVSGKGSARRKQKLQREFQEEVQHLREVNQRLRQYRQENRTNLAPLRILL RADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAEGWVEVEKNRFASEAVTVPGPTLLAPYPVRLVAMRRW DADGREVRSVILTTLQPEELTTTEVVKLYHGRQTIEAGFQEWKGTFHFGTPRMRKYEANAAFTQLVLFAFNLVRWAWRFL STNSPKLAEAGSRLLVRVAARCRATIRCLGDTLRLVFSRGTPLAGAEITLNRATPYPYALLTPRMSSCSRET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62143; Mature: 62143
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGVWPLPIHHVEVRLMQSHGTTPNIAAQAIKSTTRHGFLVALGWVAQRLNLVEILNRHL CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH RIKQKTYAHTPVDKVVEALVAILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTV HHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH CATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVIVDIDLTGQKVRGETRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHCCCCCC YTGTDFGYIQGKLARGYQIAAAFLSGKQQRFAIDGLLKSGKANSRSGACLLELIPRIEAR CCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH IGRPLRRVEWVEACLAQQKARVRQLYQQLQTVSGKGSARRKQKLQREFQEEVQHLREVNQ HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLRQYRQENRTNLAPLRILLRADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDA HHHHHHHHCCCCHHHHHHEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH VPAEGWVEVEKNRFASEAVTVPGPTLLAPYPVRLVAMRRWDADGREVRSVILTTLQPEEL CCCCCCEEEHHHHHHHCCEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCC TTTEVVKLYHGRQTIEAGFQEWKGTFHFGTPRMRKYEANAAFTQLVLFAFNLVRWAWRFL HHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHH STNSPKLAEAGSRLLVRVAARCRATIRCLGDTLRLVFSRGTPLAGAEITLNRATPYPYAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEE LTPRMSSCSRET ECCCHHCCCCCC >Mature Secondary Structure MVGVWPLPIHHVEVRLMQSHGTTPNIAAQAIKSTTRHGFLVALGWVAQRLNLVEILNRHL CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH RIKQKTYAHTPVDKVVEALVAILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTV HHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH CATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVIVDIDLTGQKVRGETRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHCCCCCC YTGTDFGYIQGKLARGYQIAAAFLSGKQQRFAIDGLLKSGKANSRSGACLLELIPRIEAR CCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH IGRPLRRVEWVEACLAQQKARVRQLYQQLQTVSGKGSARRKQKLQREFQEEVQHLREVNQ HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLRQYRQENRTNLAPLRILLRADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDA HHHHHHHHCCCCHHHHHHEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH VPAEGWVEVEKNRFASEAVTVPGPTLLAPYPVRLVAMRRWDADGREVRSVILTTLQPEEL CCCCCCEEEHHHHHHHCCEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCC TTTEVVKLYHGRQTIEAGFQEWKGTFHFGTPRMRKYEANAAFTQLVLFAFNLVRWAWRFL HHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHH STNSPKLAEAGSRLLVRVAARCRATIRCLGDTLRLVFSRGTPLAGAEITLNRATPYPYAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEE LTPRMSSCSRET ECCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA