| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yprA [H]
Identifier: 51893431
GI number: 51893431
Start: 2471980
End: 2474676
Strand: Reverse
Name: yprA [H]
Synonym: STH2293
Alternate gene names: 51893431
Gene position: 2474676-2471980 (Counterclockwise)
Preceding gene: 51893432
Following gene: 51893428
Centisome position: 69.39
GC content: 66.96
Gene sequence:
>2697_bases GTGGGTGCCGTGATCACATCCGTCTTGCAGCGCCTCGGCTGGTCGCTGGAGCATCAGCAGCTGCTGCCGGGGCGGGAACC GGAGTTCTATTCCGTCGCCGACCTGCCGTTGCGACCGGAGACGCACCGGCTGCTTGACCGGTATCCGCAGGGCGTATACC GCCACCAACGGCTTGCCCTGGAGTCCTATCTGGAGGGGAAGGACCTGTGCGTGGCTACCAGCACCGCCTCCGGGAAGAGC CTGGTTTTCTACGCCACCGGCGTCGAATGTCTGGCGGCGGACCCGAGTGCGCGCATCCTGGCCATCTACCCGCTGAAGGC CCTGGCCCGGGAGCAGGAGTCCCGCTGGCAGAAGGAACTGGAGTCGGCAGGCATCGTGGCCAGCGTCGGCCGCATCGACG GCGGGGTGAAGGACCGCCAGCAGCGGGAGCGCATCCTTGCATCCAGCCGGGTCGTGCTCATGACCCCCGACATCATCCAC GCCTGGTTGCTCAGCAGCCTTTCTGCACGCCGAGTCCAGCGATTCCTGGCCTCCCTGCGGCTGGTGATCGTGGACGAGGT GCACGTATACACCGGGGTCTTTGGCTCCAACGCCGCCTACGTCTTCCGGCGACTGCAGCACGCCGCGCGGACCCTAGCTG GTGGCGACCGGCTCCAGTTCGTGGCGGCGTCGGCTACCGTCGCCAACCCCGAGCAGCACCTCGCTCAGCTCTTCGGCCGG ACAGTGCAGGTCATCGGCGACCAAGCCGACACCTCGCCCCGGCACGAGCGGCAGCTTTACCTGGTGCGTCCGCCGGCTGG CCAGGCCCTGTATACCGCCCTGCCGCACCTCCTGCGGGCCGTTGTGGACGACACCCCTTACCGATTCCTCACTTTTGTCG ACAGCCGCCGCCAGACCGAGCAGTTGGCCACCATCCTGGCCCGGGCCCGGTTCAACAGGCCGGAAGAGGACCCGGCTTAT GGGGACGGGGTAGACGACGGTGATCTGGAGGGCAGCGGGCCGGAGGCTGAGCGGGAGGGCGATGCCGCCCTTGCCGATCG GCTGCTGGAACGGCTGCCGGTGCTCCCCTACCGCTCCGGGTACGAGGAGACCGACCGGGAGGCGATCCAGTCTCGTCTGA GCGAGGGCACCCTGCGGGGCATCATCAGTACGAGCGCCTTGGAACTGGGGCTGGACATTCAGGGGCTGGATATGGTCATC CTCGTGGGCATTCCTCAGACGGTCACAAGCCTGCAGCAGCGTATCGGCCGGGTGGGTCGGCACGGCCCCGGCAGCATCGT CCTGATCGACGCAGGCGGTCTTGCCGACGAACTGGTCTTCAACGAGCCCGAGCGCCTGTTTGACCGACCGCTCCTGCCGG CCGTCCTCCACCTGGAGAACCGCCGGATCCAGTATATCCATGCCCTGTGCTTCGCCAGCCGGGGCGGTGAGTACGACACC CTGACGGGTGCGGACGTCGAAGGGGAGGGCGACATTGCCCTGCGGGTGACCGGTTCGTGGCCTCCTGGGTTCCTGGAGCT CTGCCAGGCCGAGCGGGCCGGACAGGTGCCGCTGGATTTGCACAACCTGAAGGCCGACGGCGGGGACGACCCATGGCACG CCTTTCCCCTCAGGGACGTCGGCGTCCAGTATACGGTAGAGCAGCGCACCGGTGACCTCGTCCGGCTCGGCTCGCTGTCC AGTGCCCAGCTGATGCGGGAGGGTTATCCCGGGGCGGTGTACTACTACCTCACCCGTCCCTACCGGGTCGTGAGGGTCTC CCAGCGGGAGAAGAAAGTGCTGGTGCGGCGGGAGCGCTATTACACCACCGATCCCTACGGCCCGCTCGTCCTGATCTCGC CTCAACTGACCCCTGAGGGCCTGCATCGCGCCGTGCGCATGGGCGAACTCCGGGCGGTGGAATGTGAACTGTACGTGTCA GAGCGGGTATTCGGATATACCGAGCGGCGGGGCGGGAACAAGATGCCGCCCGTTAAGTACCCCTGTGAGTACTGGCACCT GGCTAGCTTCAGCCGAAACTACACCAGCACCGGCGTGATCCTGAGCCACCCGGCGCTCTCCAACTCTGGCGTCCAGTTGA AGCTGCTTGCAGACCTGCTGTTGGAGGCCTTCCTGCTGGTCGTGCCGTTTGAGCGCAGCGAGGTCAACAGTAGCACCGGA AAGCACTGGAAGACCCAGAACGGGTTTGGGGAGGGGGAGCCCTTCCTGGCGATCTATGACCAGACCTACGGCAGCCTGCG CCTGACCGGCCGGCTGCTGGAGCCGGCCGTCCTGCCCGAAGTGCTGACGGAGGCGTTGCATGTCCTCCGCAGCGGGCGGG TCGAGGCGGTTGAAGGGATCTCCGAGGCCACCGTGCAGGCGCTGCAAGCGCTGGCCCAGGACTGCGCGGGCCAAGCAGAG CCGTTGGAGCTGTTTTCCAGCGCACCGGAGCGGACGGGCGAACTGGAGGGGGAACCGGTCATCGCCCCCGGCAGCGTGGG TTGGATCATCACCGACGACAACCAGGAGTTTCAGATCCAGCGCGTCTTCTACCATCCGAGGGAGGGGCTCCGGTACTACG GCCGGCGCCTGGGCCAGCAAGAGCAGCCGGACGTGCAGGTCTGGTTCCCGGTGACCAACATCCGGCCGATTCCGGGCATC AGCCGCATGGGGATCTACGACTACGAGACGGGCGAGGTCCGGCCGCTGGACGAGTGA
Upstream 100 bases:
>100_bases GACACTATGCTGTCACTCGCCTCCCTTACTCTGGGAGACGTCAGGTGACTTTTCCCCGTCTCCCCGTCCGGTGGGTGCGG GAATGCACGAAGAGTAAGGG
Downstream 100 bases:
>100_bases CGCGCAAACGGTGCCCTGATGGGTCAGGGCACCGTTTGCGGCGTGTTGCGCTCATGCGAACCGGGTGTGGCCGGCCAGCT TCGCCCGCTCCAGCATCTGC
Product: ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MGAVITSVLQRLGWSLEHQQLLPGREPEFYSVADLPLRPETHRLLDRYPQGVYRHQRLALESYLEGKDLCVATSTASGKS LVFYATGVECLAADPSARILAIYPLKALAREQESRWQKELESAGIVASVGRIDGGVKDRQQRERILASSRVVLMTPDIIH AWLLSSLSARRVQRFLASLRLVIVDEVHVYTGVFGSNAAYVFRRLQHAARTLAGGDRLQFVAASATVANPEQHLAQLFGR TVQVIGDQADTSPRHERQLYLVRPPAGQALYTALPHLLRAVVDDTPYRFLTFVDSRRQTEQLATILARARFNRPEEDPAY GDGVDDGDLEGSGPEAEREGDAALADRLLERLPVLPYRSGYEETDREAIQSRLSEGTLRGIISTSALELGLDIQGLDMVI LVGIPQTVTSLQQRIGRVGRHGPGSIVLIDAGGLADELVFNEPERLFDRPLLPAVLHLENRRIQYIHALCFASRGGEYDT LTGADVEGEGDIALRVTGSWPPGFLELCQAERAGQVPLDLHNLKADGGDDPWHAFPLRDVGVQYTVEQRTGDLVRLGSLS SAQLMREGYPGAVYYYLTRPYRVVRVSQREKKVLVRRERYYTTDPYGPLVLISPQLTPEGLHRAVRMGELRAVECELYVS ERVFGYTERRGGNKMPPVKYPCEYWHLASFSRNYTSTGVILSHPALSNSGVQLKLLADLLLEAFLLVVPFERSEVNSSTG KHWKTQNGFGEGEPFLAIYDQTYGSLRLTGRLLEPAVLPEVLTEALHVLRSGRVEAVEGISEATVQALQALAQDCAGQAE PLELFSSAPERTGELEGEPVIAPGSVGWIITDDNQEFQIQRVFYHPREGLRYYGRRLGQQEQPDVQVWFPVTNIRPIPGI SRMGIYDYETGEVRPLDE
Sequences:
>Translated_898_residues MGAVITSVLQRLGWSLEHQQLLPGREPEFYSVADLPLRPETHRLLDRYPQGVYRHQRLALESYLEGKDLCVATSTASGKS LVFYATGVECLAADPSARILAIYPLKALAREQESRWQKELESAGIVASVGRIDGGVKDRQQRERILASSRVVLMTPDIIH AWLLSSLSARRVQRFLASLRLVIVDEVHVYTGVFGSNAAYVFRRLQHAARTLAGGDRLQFVAASATVANPEQHLAQLFGR TVQVIGDQADTSPRHERQLYLVRPPAGQALYTALPHLLRAVVDDTPYRFLTFVDSRRQTEQLATILARARFNRPEEDPAY GDGVDDGDLEGSGPEAEREGDAALADRLLERLPVLPYRSGYEETDREAIQSRLSEGTLRGIISTSALELGLDIQGLDMVI LVGIPQTVTSLQQRIGRVGRHGPGSIVLIDAGGLADELVFNEPERLFDRPLLPAVLHLENRRIQYIHALCFASRGGEYDT LTGADVEGEGDIALRVTGSWPPGFLELCQAERAGQVPLDLHNLKADGGDDPWHAFPLRDVGVQYTVEQRTGDLVRLGSLS SAQLMREGYPGAVYYYLTRPYRVVRVSQREKKVLVRRERYYTTDPYGPLVLISPQLTPEGLHRAVRMGELRAVECELYVS ERVFGYTERRGGNKMPPVKYPCEYWHLASFSRNYTSTGVILSHPALSNSGVQLKLLADLLLEAFLLVVPFERSEVNSSTG KHWKTQNGFGEGEPFLAIYDQTYGSLRLTGRLLEPAVLPEVLTEALHVLRSGRVEAVEGISEATVQALQALAQDCAGQAE PLELFSSAPERTGELEGEPVIAPGSVGWIITDDNQEFQIQRVFYHPREGLRYYGRRLGQQEQPDVQVWFPVTNIRPIPGI SRMGIYDYETGEVRPLDE >Mature_897_residues GAVITSVLQRLGWSLEHQQLLPGREPEFYSVADLPLRPETHRLLDRYPQGVYRHQRLALESYLEGKDLCVATSTASGKSL VFYATGVECLAADPSARILAIYPLKALAREQESRWQKELESAGIVASVGRIDGGVKDRQQRERILASSRVVLMTPDIIHA WLLSSLSARRVQRFLASLRLVIVDEVHVYTGVFGSNAAYVFRRLQHAARTLAGGDRLQFVAASATVANPEQHLAQLFGRT VQVIGDQADTSPRHERQLYLVRPPAGQALYTALPHLLRAVVDDTPYRFLTFVDSRRQTEQLATILARARFNRPEEDPAYG DGVDDGDLEGSGPEAEREGDAALADRLLERLPVLPYRSGYEETDREAIQSRLSEGTLRGIISTSALELGLDIQGLDMVIL VGIPQTVTSLQQRIGRVGRHGPGSIVLIDAGGLADELVFNEPERLFDRPLLPAVLHLENRRIQYIHALCFASRGGEYDTL TGADVEGEGDIALRVTGSWPPGFLELCQAERAGQVPLDLHNLKADGGDDPWHAFPLRDVGVQYTVEQRTGDLVRLGSLSS AQLMREGYPGAVYYYLTRPYRVVRVSQREKKVLVRRERYYTTDPYGPLVLISPQLTPEGLHRAVRMGELRAVECELYVSE RVFGYTERRGGNKMPPVKYPCEYWHLASFSRNYTSTGVILSHPALSNSGVQLKLLADLLLEAFLLVVPFERSEVNSSTGK HWKTQNGFGEGEPFLAIYDQTYGSLRLTGRLLEPAVLPEVLTEALHVLRSGRVEAVEGISEATVQALQALAQDCAGQAEP LELFSSAPERTGELEGEPVIAPGSVGWIITDDNQEFQIQRVFYHPREGLRYYGRRLGQQEQPDVQVWFPVTNIRPIPGIS RMGIYDYETGEVRPLDE
Specific function: Unknown
COG id: COG1205
COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787942, Length=389, Percent_Identity=26.7352185089974, Blast_Score=71, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6320497, Length=467, Percent_Identity=29.1220556745182, Blast_Score=189, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR018973 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF09369 DUF1998; PF00271 Helicase_C [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 99968; Mature: 99836
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAVITSVLQRLGWSLEHQQLLPGREPEFYSVADLPLRPETHRLLDRYPQGVYRHQRLAL CCHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHH ESYLEGKDLCVATSTASGKSLVFYATGVECLAADPSARILAIYPLKALAREQESRWQKEL HHHCCCCCEEEEECCCCCCEEEEEECCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHH ESAGIVASVGRIDGGVKDRQQRERILASSRVVLMTPDIIHAWLLSSLSARRVQRFLASLR HHCCCEEEHHHCCCCCCHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHE LVIVDEVHVYTGVFGSNAAYVFRRLQHAARTLAGGDRLQFVAASATVANPEQHLAQLFGR EHEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH TVQVIGDQADTSPRHERQLYLVRPPAGQALYTALPHLLRAVVDDTPYRFLTFVDSRRQTE HEEHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH QLATILARARFNRPEEDPAYGDGVDDGDLEGSGPEAEREGDAALADRLLERLPVLPYRSG HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC YEETDREAIQSRLSEGTLRGIISTSALELGLDIQGLDMVILVGIPQTVTSLQQRIGRVGR CCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCC HGPGSIVLIDAGGLADELVFNEPERLFDRPLLPAVLHLENRRIQYIHALCFASRGGEYDT CCCCCEEEEECCCCHHHHHCCCCHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCC LTGADVEGEGDIALRVTGSWPPGFLELCQAERAGQVPLDLHNLKADGGDDPWHAFPLRDV CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCEECCHHHC GVQYTVEQRTGDLVRLGSLSSAQLMREGYPGAVYYYLTRPYRVVRVSQREKKVLVRRERY CEEEEEECCCCCEEEECCCCHHHHHHCCCCCEEEEEEECCEEEEEECCHHHHHHHHHHHC YTTDPYGPLVLISPQLTPEGLHRAVRMGELRAVECELYVSERVFGYTERRGGNKMPPVKY CCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEHHHHHCCHHHCCCCCCCCCCC PCEYWHLASFSRNYTSTGVILSHPALSNSGVQLKLLADLLLEAFLLVVPFERSEVNSSTG CCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC KHWKTQNGFGEGEPFLAIYDQTYGSLRLTGRLLEPAVLPEVLTEALHVLRSGRVEAVEGI CCCCCCCCCCCCCCEEEEEECCCCCEEEECHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH SEATVQALQALAQDCAGQAEPLELFSSAPERTGELEGEPVIAPGSVGWIITDDNQEFQIQ HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCEEEE RVFYHPREGLRYYGRRLGQQEQPDVQVWFPVTNIRPIPGISRMGIYDYETGEVRPLDE EEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCC >Mature Secondary Structure GAVITSVLQRLGWSLEHQQLLPGREPEFYSVADLPLRPETHRLLDRYPQGVYRHQRLAL CHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHH ESYLEGKDLCVATSTASGKSLVFYATGVECLAADPSARILAIYPLKALAREQESRWQKEL HHHCCCCCEEEEECCCCCCEEEEEECCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHH ESAGIVASVGRIDGGVKDRQQRERILASSRVVLMTPDIIHAWLLSSLSARRVQRFLASLR HHCCCEEEHHHCCCCCCHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHE LVIVDEVHVYTGVFGSNAAYVFRRLQHAARTLAGGDRLQFVAASATVANPEQHLAQLFGR EHEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH TVQVIGDQADTSPRHERQLYLVRPPAGQALYTALPHLLRAVVDDTPYRFLTFVDSRRQTE HEEHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH QLATILARARFNRPEEDPAYGDGVDDGDLEGSGPEAEREGDAALADRLLERLPVLPYRSG HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC YEETDREAIQSRLSEGTLRGIISTSALELGLDIQGLDMVILVGIPQTVTSLQQRIGRVGR CCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCC HGPGSIVLIDAGGLADELVFNEPERLFDRPLLPAVLHLENRRIQYIHALCFASRGGEYDT CCCCCEEEEECCCCHHHHHCCCCHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCC LTGADVEGEGDIALRVTGSWPPGFLELCQAERAGQVPLDLHNLKADGGDDPWHAFPLRDV CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCEECCHHHC GVQYTVEQRTGDLVRLGSLSSAQLMREGYPGAVYYYLTRPYRVVRVSQREKKVLVRRERY CEEEEEECCCCCEEEECCCCHHHHHHCCCCCEEEEEEECCEEEEEECCHHHHHHHHHHHC YTTDPYGPLVLISPQLTPEGLHRAVRMGELRAVECELYVSERVFGYTERRGGNKMPPVKY CCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEHHHHHCCHHHCCCCCCCCCCC PCEYWHLASFSRNYTSTGVILSHPALSNSGVQLKLLADLLLEAFLLVVPFERSEVNSSTG CCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC KHWKTQNGFGEGEPFLAIYDQTYGSLRLTGRLLEPAVLPEVLTEALHVLRSGRVEAVEGI CCCCCCCCCCCCCCEEEEEECCCCCEEEECHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH SEATVQALQALAQDCAGQAEPLELFSSAPERTGELEGEPVIAPGSVGWIITDDNQEFQIQ HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCEEEE RVFYHPREGLRYYGRRLGQQEQPDVQVWFPVTNIRPIPGISRMGIYDYETGEVRPLDE EEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]