| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893405
Identifier: 51893405
GI number: 51893405
Start: 2435247
End: 2436893
Strand: Reverse
Name: 51893405
Synonym: STH2267
Alternate gene names: NA
Gene position: 2436893-2435247 (Counterclockwise)
Preceding gene: 51893407
Following gene: 51893401
Centisome position: 68.33
GC content: 61.08
Gene sequence:
>1647_bases TTGCCCCTCTTAAACCACCATGTGGAGGTTCGACTGATGCAGTCTCATGGTACGACGCCCGAAGTCACTGCGCAAGCCAT CAAATGCACCACCCGGCATGGTTTTCTTGTCGCTCTTGGTTGGGTAGCGCAAAGGCTGAACCTGGTTGACGTGTTGAACC GGCACCTGCGGATCAATCAGAAGACCTACACCCATACGCCGGTCGACAAGGTAGTCGAGGCGTTGGTTGCCATTCTCGGC AACTGCCGCTACATGAAGGACCTGAACTTCGATCCCGAGCCGCTGGTCGCCGACCCTGCCGTAGCTCAAGCCTGGGGGCA GGAACGCTTTGCTCACTTCTCCACCGTCTGTGCGACCTTCAGCAAACTAACGGAGGAAAACGTTCAACAACTTTCCGATG CACTGGCGGAGATCCAGGCTCCCCTGCTTCAGCAGGAGGTTGCGGCGGTGGCTGGCCCAGACCGGTCCGGAATGGTCATC GTGGACATCGACCTCACCGGCCAGAAGGTCCGGGGAGAGACCAGGCAGTACACCGGTACCGACTTTGGCTACATCCAGGG GCAACTGGCCCGCGGCTATCAGATCGCAGCCGCCTTCCTCACTGGAAAGCAGCAGCGCTTTGCCATCGACGGCCTTCTCA AGTCCGGTAAGGCCAACAGCCGCTCTGGCGCCTGCCTGCTCGAACTGATCCCCAGGGTGGAAGCCCGGATCGGCCGCCCC CTGCGGCGGGTGGAATGGGTTGAAGCATGCCTGGCTCAGCAGAAGGTGCGGGTCCGGCAGTTGCATCAGGCATTACAGAC GGTATCGGGCAAGGGCAGCGCCCGGCGGAAACAGAAACTGCAGTCCGAGTTACAGGAGACGGTCCAGGTCATCCGTGAAC TGAACCATCGGCTCCGGCAGTACAGGCAGGACAATCAGACGAACCCGGCTCCCCTCCGGATCGTGCTGCGAGCCGACAGC GCCTTTGGCACGCCGGAGGTGATCCAGCGGCTGCTGGAGCTGGGATACGAGTTCACCATCAAGTCCTACTCCGGAAGCAA TCCCGCCTACAAGCGCCTCTTCGACGCCGTGCCGGCGGAGGGCTGGGTTGAAGTCGAGAAGAACCGGTTTGCCTCCGAAG CCGTTGCTGTGCCTGGCCCAACGCTGCTCGCACCGTATCCGGTGCGGCTTGTCGCCATGCGCCGCTGGAATACGGATGGC CGGGAAGTCCGCAGCGTGATCCTGACCACGCTCCAAACCGAGGCGCTAACCATGACAGAGGTCGTGAAACTCTACCACGG ACGCCAGACCATCGAAGCCGGATTCCAGGAGTGGAAGGGAACGTTTCACTTTGGTGCACCCCGGCTGCGCAAGTACGAGG CCAACGCCGCCTTTACGCAGCTCGTCCTGTTTGCCTTCAACCTGGTGCGTTGGGCCTGGCGCTATCTGAGCACCTCCTCG TCCAAACTGGCCGAGGCCAAGAGTCGACTCCTGGTACGGGTAGCGGCCCGGTGCCGGGCAACCATACGGTGTATTGGTGA CACGCTGCGGCTGGTGTTCAGCCGGGGTACTCCCCTGGCTGGAGCGGAGATTACCCTGAACCGGGCCGTTTCTTACCAAT GCACTTTTTCAACACCACGAATGTCGAGTTGTTCGCGTGAAACTTGA
Upstream 100 bases:
>100_bases CTGCTGAGCCTAGCTCAAGTTTCGCGTGAATAACCCGCACTCCGTACAATGGAAACCCATTGAAAAAGCATCAGTCTGAA CCAATGATACATGGTGGGAT
Downstream 100 bases:
>100_bases GCTAGAACAGTGTAGCTTGTACAGTTCCGGATGCGACTCGTTTTCTTGGGCTGCGGTGAATCCGTGCCGTCCTGCGGCAC TCCGTGAGTGCCTGGCGGCT
Product: transposase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MPLLNHHVEVRLMQSHGTTPEVTAQAIKCTTRHGFLVALGWVAQRLNLVDVLNRHLRINQKTYTHTPVDKVVEALVAILG NCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVI VDIDLTGQKVRGETRQYTGTDFGYIQGQLARGYQIAAAFLTGKQQRFAIDGLLKSGKANSRSGACLLELIPRVEARIGRP LRRVEWVEACLAQQKVRVRQLHQALQTVSGKGSARRKQKLQSELQETVQVIRELNHRLRQYRQDNQTNPAPLRIVLRADS AFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAEGWVEVEKNRFASEAVAVPGPTLLAPYPVRLVAMRRWNTDG REVRSVILTTLQTEALTMTEVVKLYHGRQTIEAGFQEWKGTFHFGAPRLRKYEANAAFTQLVLFAFNLVRWAWRYLSTSS SKLAEAKSRLLVRVAARCRATIRCIGDTLRLVFSRGTPLAGAEITLNRAVSYQCTFSTPRMSSCSRET
Sequences:
>Translated_548_residues MPLLNHHVEVRLMQSHGTTPEVTAQAIKCTTRHGFLVALGWVAQRLNLVDVLNRHLRINQKTYTHTPVDKVVEALVAILG NCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVI VDIDLTGQKVRGETRQYTGTDFGYIQGQLARGYQIAAAFLTGKQQRFAIDGLLKSGKANSRSGACLLELIPRVEARIGRP LRRVEWVEACLAQQKVRVRQLHQALQTVSGKGSARRKQKLQSELQETVQVIRELNHRLRQYRQDNQTNPAPLRIVLRADS AFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAEGWVEVEKNRFASEAVAVPGPTLLAPYPVRLVAMRRWNTDG REVRSVILTTLQTEALTMTEVVKLYHGRQTIEAGFQEWKGTFHFGAPRLRKYEANAAFTQLVLFAFNLVRWAWRYLSTSS SKLAEAKSRLLVRVAARCRATIRCIGDTLRLVFSRGTPLAGAEITLNRAVSYQCTFSTPRMSSCSRET >Mature_547_residues PLLNHHVEVRLMQSHGTTPEVTAQAIKCTTRHGFLVALGWVAQRLNLVDVLNRHLRINQKTYTHTPVDKVVEALVAILGN CRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATFSKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVIV DIDLTGQKVRGETRQYTGTDFGYIQGQLARGYQIAAAFLTGKQQRFAIDGLLKSGKANSRSGACLLELIPRVEARIGRPL RRVEWVEACLAQQKVRVRQLHQALQTVSGKGSARRKQKLQSELQETVQVIRELNHRLRQYRQDNQTNPAPLRIVLRADSA FGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAEGWVEVEKNRFASEAVAVPGPTLLAPYPVRLVAMRRWNTDGR EVRSVILTTLQTEALTMTEVVKLYHGRQTIEAGFQEWKGTFHFGAPRLRKYEANAAFTQLVLFAFNLVRWAWRYLSTSSS KLAEAKSRLLVRVAARCRATIRCIGDTLRLVFSRGTPLAGAEITLNRAVSYQCTFSTPRMSSCSRET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61454; Mature: 61323
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLNHHVEVRLMQSHGTTPEVTAQAIKCTTRHGFLVALGWVAQRLNLVDVLNRHLRINQ CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECC KTYTHTPVDKVVEALVAILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATF CCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVIVDIDLTGQKVRGETRQYTGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHCCCCCCCCCC DFGYIQGQLARGYQIAAAFLTGKQQRFAIDGLLKSGKANSRSGACLLELIPRVEARIGRP CCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCH LRRVEWVEACLAQQKVRVRQLHQALQTVSGKGSARRKQKLQSELQETVQVIRELNHRLRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YRQDNQTNPAPLRIVLRADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAE HHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCC GWVEVEKNRFASEAVAVPGPTLLAPYPVRLVAMRRWNTDGREVRSVILTTLQTEALTMTE CCEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH VVKLYHGRQTIEAGFQEWKGTFHFGAPRLRKYEANAAFTQLVLFAFNLVRWAWRYLSTSS HHHHHHCHHHHHHHHHHCCCCEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH SKLAEAKSRLLVRVAARCRATIRCIGDTLRLVFSRGTPLAGAEITLNRAVSYQCTFSTPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEEEEEEECCCC MSSCSRET CCCCCCCC >Mature Secondary Structure PLLNHHVEVRLMQSHGTTPEVTAQAIKCTTRHGFLVALGWVAQRLNLVDVLNRHLRINQ CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECC KTYTHTPVDKVVEALVAILGNCRYMKDLNFDPEPLVADPAVAQAWGQERFAHFSTVCATF CCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SKLTEENVQQLSDALAEIQAPLLQQEVAAVAGPDRSGMVIVDIDLTGQKVRGETRQYTGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHCCCCCCCCCC DFGYIQGQLARGYQIAAAFLTGKQQRFAIDGLLKSGKANSRSGACLLELIPRVEARIGRP CCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCH LRRVEWVEACLAQQKVRVRQLHQALQTVSGKGSARRKQKLQSELQETVQVIRELNHRLRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YRQDNQTNPAPLRIVLRADSAFGTPEVIQRLLELGYEFTIKSYSGSNPAYKRLFDAVPAE HHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCC GWVEVEKNRFASEAVAVPGPTLLAPYPVRLVAMRRWNTDGREVRSVILTTLQTEALTMTE CCEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH VVKLYHGRQTIEAGFQEWKGTFHFGAPRLRKYEANAAFTQLVLFAFNLVRWAWRYLSTSS HHHHHHCHHHHHHHHHHCCCCEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH SKLAEAKSRLLVRVAARCRATIRCIGDTLRLVFSRGTPLAGAEITLNRAVSYQCTFSTPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEEEEEEECCCC MSSCSRET CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA