| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893385
Identifier: 51893385
GI number: 51893385
Start: 2411743
End: 2413758
Strand: Reverse
Name: 51893385
Synonym: STH2247
Alternate gene names: NA
Gene position: 2413758-2411743 (Counterclockwise)
Preceding gene: 51893386
Following gene: 51893384
Centisome position: 67.69
GC content: 71.08
Gene sequence:
>2016_bases GTGATCCACGATCGAGGACGAGATATTGTCGTGGTGACGGATCGACCCAACTACCCTGGGGAAGAGAACCGGCCAGTAGG GCGGCCCCTATGCTCTCGCAGCCACGGCAAGGTGTGGGTGGTGCAGGGGCTCGACCGGCCGAGTGACATGGTCCGATGGC AGTACTATGAGGCAGAGACCACGAAACAAGATGAAAGCGGCTTCGGCGGCTTCATCACGCCCTCCGCCGTCATGGCTCCG CCCCACGGGAGCAACCCCAGCTTTGTCATCGGCACCGATGGCTTTGAGGGAGGGCGCGCGCTGCGGCTGGCCCTGGACCG CGACAACGACTATCGCCCTTACCGGGTCTGGACAGTCGACAGTACCGCCGGCTTCGCCGGCAACTTCACCTCAGACGGCA CCCACGCGTACTGGTTGGACACCCGGGGGCGTCTCTGGGGCGCCAATCTGCATGACGGGCTGGAGCCCGCCGGCTGGAAA GGGCACATGGTCGACGTCCCCGCCCTCATCGGCGCCAGGAACGCCTTCACCAACACCGAACCCGCGGTCGAGGTCCGCCA GACCCCCGACGGCCCCAAGACCCACCTCTACGTCACCCTCCGCAACTACACCGACACCGGCGCGGGCCTCCGGGACGGCC CGACCGGCAGCGACGGCGCCGTCGTGGCGCTGGGCCCCGGCGGCGAACTGAAGTGGTACCGCAAGTTCGGCCCGGCGGAC CGGCTGGGCGAGCGGATGGCCTCCCTCAACACCGCACCGCTGGCCCTGATCAGCCGGGGCGCACTCATCTTCGGCGACGT GAGCGGCCACATCTACAGCTACGCCCTGGACACCGGCCAGCCGATGGGCGGCGACGGGCGGCCCGCGCTCATCCAGCCGG AAGGGCGGGCGCCCACGGACCGGCTGTTCCTGCTGAAGGACGACGAGCAGCCGAACACCGGCCCCTACAACTTCTCCCAG GTCTCAGGCGTCGGCGTCGATCCCGCCTTCGCCTACGGCCTGCTGCTCGTCGGCGTCAACTACACCGACGCTTCCGGGGC CTCCGGCCGGCTGGTGGCCTACCGGGCCGGCGAGGCCTACGACCTGCGGTGGCTGGATGAACCGGGGCCCCTGGAGCTGG AGCCGGGCAAGACAGTCGCCCTGCAGCCCCGGCTGCAGCTGGAGCTGACGGCCCGGCCCCTGGCCGCGCTCTGCCCGGGC CCGCTGTCCGTCGAGTGGTTCCTCACCGACGAGAGCGGCAAGCTGGTGCGGTCCCTGGGGACGGCGCCGCTGCCCGGCGA CCTGGCGCCGCAGCAGCCCCACCCGGTGCCGCTGACCGTCGCCCTGACAGAGACCGACCCGGCGGAGGGGCAGATCATCC GCGTCATCGACCTGCCCTCCGTGTACGCCCTCAGCGCGCCGCACACGGCCAACCCGAAGGTGGCGGCGGCCCGGGGCCTC GCGGCGGCGCTGGGGCTTCCGGCCGAGAAGAGCTGCGCCGGTGCGGCGGCCGAGGTGGTGGAGCGGGAGGGGGAGCCGGG GCCGGAGGGCGGCCTGGCCAACAACGTGCTGATCGTGCCGTACCGCAACCCGCAGCCGCCCGATGAGCCTGAGCGTCCGG GCGAGGAGGGCGGAGGCGGGAAAATGATCATCGACGACCCGTGGGTGGCGGAGCTGGCGGTGCCGGAGGTGGCCGAGGCA GGCCGGCCGTTTGAGGTCGGGATCTACCTGGGTTACCAGAACAACCTGGGTCAGGACGAGATCCGGGTGTCGCTCCGGCT GTGGGCGCGGCCTGCGGGGGGCGCATCACCGCCCCCGGACGTGTGGCAGATGGTGACGATCGACAAGGTGCCCTGCTGCA GCCTGAAGCCGGGGACGATCCCGGGGCTGAGCGCGGGCACCTGGGAGATCGTCGCCGAGATCGACTACCCGGAGGACACC CGGCCGGAGAACAACCGCGTGATCCGCCGGGTGGAGGTGCTCTCGTCCAAGCCTGTGGAGGTGGGCGGCCCGGAGGGAGG GGCGATCACGGACTGA
Upstream 100 bases:
>100_bases CGGAACCAGCTATGGTTGGTTGTGGGCCTACCATACCAAGGAAAGATGGTATCGACCGGCTGAACTGGACCTGGGTTGTC CCATCGTGGGTTCACCACTG
Downstream 100 bases:
>100_bases TCCCGCACGCCCCAACCCCCGGCGCGGGCGGCCCGCACGCCCGGGCCGCGCCCAGCACGGGGCGGCATGAGCGACTGTAC CCATGCGCTACACGGGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 671; Mature: 671
Protein sequence:
>671_residues MIHDRGRDIVVVTDRPNYPGEENRPVGRPLCSRSHGKVWVVQGLDRPSDMVRWQYYEAETTKQDESGFGGFITPSAVMAP PHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTSDGTHAYWLDTRGRLWGANLHDGLEPAGWK GHMVDVPALIGARNAFTNTEPAVEVRQTPDGPKTHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPAD RLGERMASLNTAPLALISRGALIFGDVSGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQPNTGPYNFSQ VSGVGVDPAFAYGLLLVGVNYTDASGASGRLVAYRAGEAYDLRWLDEPGPLELEPGKTVALQPRLQLELTARPLAALCPG PLSVEWFLTDESGKLVRSLGTAPLPGDLAPQQPHPVPLTVALTETDPAEGQIIRVIDLPSVYALSAPHTANPKVAAARGL AAALGLPAEKSCAGAAAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKMIIDDPWVAELAVPEVAEA GRPFEVGIYLGYQNNLGQDEIRVSLRLWARPAGGASPPPDVWQMVTIDKVPCCSLKPGTIPGLSAGTWEIVAEIDYPEDT RPENNRVIRRVEVLSSKPVEVGGPEGGAITD
Sequences:
>Translated_671_residues MIHDRGRDIVVVTDRPNYPGEENRPVGRPLCSRSHGKVWVVQGLDRPSDMVRWQYYEAETTKQDESGFGGFITPSAVMAP PHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTSDGTHAYWLDTRGRLWGANLHDGLEPAGWK GHMVDVPALIGARNAFTNTEPAVEVRQTPDGPKTHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPAD RLGERMASLNTAPLALISRGALIFGDVSGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQPNTGPYNFSQ VSGVGVDPAFAYGLLLVGVNYTDASGASGRLVAYRAGEAYDLRWLDEPGPLELEPGKTVALQPRLQLELTARPLAALCPG PLSVEWFLTDESGKLVRSLGTAPLPGDLAPQQPHPVPLTVALTETDPAEGQIIRVIDLPSVYALSAPHTANPKVAAARGL AAALGLPAEKSCAGAAAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKMIIDDPWVAELAVPEVAEA GRPFEVGIYLGYQNNLGQDEIRVSLRLWARPAGGASPPPDVWQMVTIDKVPCCSLKPGTIPGLSAGTWEIVAEIDYPEDT RPENNRVIRRVEVLSSKPVEVGGPEGGAITD >Mature_671_residues MIHDRGRDIVVVTDRPNYPGEENRPVGRPLCSRSHGKVWVVQGLDRPSDMVRWQYYEAETTKQDESGFGGFITPSAVMAP PHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTSDGTHAYWLDTRGRLWGANLHDGLEPAGWK GHMVDVPALIGARNAFTNTEPAVEVRQTPDGPKTHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPAD RLGERMASLNTAPLALISRGALIFGDVSGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQPNTGPYNFSQ VSGVGVDPAFAYGLLLVGVNYTDASGASGRLVAYRAGEAYDLRWLDEPGPLELEPGKTVALQPRLQLELTARPLAALCPG PLSVEWFLTDESGKLVRSLGTAPLPGDLAPQQPHPVPLTVALTETDPAEGQIIRVIDLPSVYALSAPHTANPKVAAARGL AAALGLPAEKSCAGAAAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKMIIDDPWVAELAVPEVAEA GRPFEVGIYLGYQNNLGQDEIRVSLRLWARPAGGASPPPDVWQMVTIDKVPCCSLKPGTIPGLSAGTWEIVAEIDYPEDT RPENNRVIRRVEVLSSKPVEVGGPEGGAITD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71695; Mature: 71695
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHDRGRDIVVVTDRPNYPGEENRPVGRPLCSRSHGKVWVVQGLDRPSDMVRWQYYEAET CCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCEEEEEEECCC TKQDESGFGGFITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVD CCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEC STAGFAGNFTSDGTHAYWLDTRGRLWGANLHDGLEPAGWKGHMVDVPALIGARNAFTNTE CCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCC PAVEVRQTPDGPKTHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPAD CCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHH RLGERMASLNTAPLALISRGALIFGDVSGHIYSYALDTGQPMGGDGRPALIQPEGRAPTD HHHHHHHHCCCCCCHHHCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCC RLFLLKDDEQPNTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGASGRLVAYRAGEAY EEEEEECCCCCCCCCCCHHHCCCCCCCHHHHEEEEEEEECCCCCCCCCCCEEEEECCCEE DLRWLDEPGPLELEPGKTVALQPRLQLELTARPLAALCPGPLSVEWFLTDESGKLVRSLG EEEECCCCCCEEECCCCEEEECCCEEEEEECCCHHHHCCCCCEEEEEEECCCCHHHHHHC TAPLPGDLAPQQPHPVPLTVALTETDPAEGQIIRVIDLPSVYALSAPHTANPKVAAARGL CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHH AAALGLPAEKSCAGAAAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGG HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC KMIIDDPWVAELAVPEVAEAGRPFEVGIYLGYQNNLGQDEIRVSLRLWARPAGGASPPPD EEEECCCCEEECCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC VWQMVTIDKVPCCSLKPGTIPGLSAGTWEIVAEIDYPEDTRPENNRVIRRVEVLSSKPVE CEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHCCCCCE VGGPEGGAITD ECCCCCCCCCC >Mature Secondary Structure MIHDRGRDIVVVTDRPNYPGEENRPVGRPLCSRSHGKVWVVQGLDRPSDMVRWQYYEAET CCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCEEEEEEECCC TKQDESGFGGFITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVD CCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEC STAGFAGNFTSDGTHAYWLDTRGRLWGANLHDGLEPAGWKGHMVDVPALIGARNAFTNTE CCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCC PAVEVRQTPDGPKTHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPAD CCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHH RLGERMASLNTAPLALISRGALIFGDVSGHIYSYALDTGQPMGGDGRPALIQPEGRAPTD HHHHHHHHCCCCCCHHHCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCC RLFLLKDDEQPNTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGASGRLVAYRAGEAY EEEEEECCCCCCCCCCCHHHCCCCCCCHHHHEEEEEEEECCCCCCCCCCCEEEEECCCEE DLRWLDEPGPLELEPGKTVALQPRLQLELTARPLAALCPGPLSVEWFLTDESGKLVRSLG EEEECCCCCCEEECCCCEEEECCCEEEEEECCCHHHHCCCCCEEEEEEECCCCHHHHHHC TAPLPGDLAPQQPHPVPLTVALTETDPAEGQIIRVIDLPSVYALSAPHTANPKVAAARGL CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHH AAALGLPAEKSCAGAAAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGG HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC KMIIDDPWVAELAVPEVAEAGRPFEVGIYLGYQNNLGQDEIRVSLRLWARPAGGASPPPD EEEECCCCEEECCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC VWQMVTIDKVPCCSLKPGTIPGLSAGTWEIVAEIDYPEDTRPENNRVIRRVEVLSSKPVE CEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHCCCCCE VGGPEGGAITD ECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA