| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893367
Identifier: 51893367
GI number: 51893367
Start: 2395933
End: 2397432
Strand: Reverse
Name: 51893367
Synonym: STH2229
Alternate gene names: NA
Gene position: 2397432-2395933 (Counterclockwise)
Preceding gene: 51893368
Following gene: 51893366
Centisome position: 67.23
GC content: 65.73
Gene sequence:
>1500_bases ATGGAGAGTCTGCAGGGACTGATGCAAGGCTTTTCGGTCGCGATGCTGCCCACCAACCTGCTGTTCGCCTTCCTGGGCTG CCTGCTGGGCACCGCGATCGGCGTGCTCCCCGGCCTGGGGCCCGCCGGCACCATCTCGCTCCTGCTGCCCGTGGTCTACT CGATGGGCTCCTCGGCCACGACCCTGATCTTCCTCGCCGGCATCTACTACGGCTCCATGTACGGCGGTTCGACCACCTCG ATCCTGCTCAACCTCCCGGGTGAGGCGGCGTCTGTCATTACGGCTATCGACGGCTACGAGATGGCCAAGAAGGGGCGGGC TGGCGCGGCGCTCAGCATCGCGGCCATCGGCTCCTTCCTCGCAGGCACCCTGGCCGTCGTGGGGCTCACGTTCGTGGCGC CTCCGGTCGCGGAGTTCGCCCTGGACTTCGGCCCGCCCGAGTACTTCTCCCTGACCTTGCTCGGCCTCTTCCTGGCTGTC TTCCTCTCGGGAGGCTCCATGGCCAAGGGTGTCGTCCTGCTGGCGGCGGGCGTGCTGCTCGCCAGCGTCGGCCTGGACCC GGTGACAGGCAAGGCTCGGTTTACCTTCGGGAGCGTCGCCATGCAAAGCGGCTTCGACTTCACCACACTGGCGATGGGCG TCTTCGGCCTGGGCGAGATTTTCTTCAATCTGGAGAAGGCGGACTTCATGGGGACGATCACCGCGAAGATCGGTCGCCTG CTGCCGACCGCAAAGGAGTGGGCTGAGTCCCGTTGGGCGATCGTCCGCGGGGCCGTGCTCGGTTTCGCCGTTGGCGTACT CCCCGGCGGCGGCGGCGTGCTGGGCTCGCTGGCCTCTTACGCCACCGAGCGGAAGCTCTCCAAGCACCCGGAGGAGTTCG GCAAGGGCGCGATAGCCGGCGTGGCTGGCCCCGAGTCGGCCAACAACGCCGCTTCTACCGCTTCGTTCATCCCGCTGCTG ACGCTGGGCATTCCCACCAACTCGTCGATGGCGGTGATCTTCGCCGCCCTGCTGATCCAGGGCGTCACTCCCGGCCCGTT CCTCATTACGGAGCATCCGGACGTCTTTTGGGGCGTCATCGCTTCCATGTACATCGGCAACCTGATGCTGCTCGTCCTGA ACCTGCCGCTGGTGGGAGTCTGGGTACGGCTACTGAAGGTCCCCTTCAACATCCTGGGCCCCCTGGTCGTGCTGCTCACG GTGATCGGCGTGTACAGCACCACCAACGACGTCTTCCAGGTCTTCGTGCTGATCGGCTTCGGCGTCCTCGGTTACTTCAT GCGTAAGTTCCGCTTCGATCCCGGCCCGCTACCCCTGGCGTTCGTGCTGGCCCCGACCATCGAGAACTCGCTGCGCCAGT CGCTGATCATGTCCCGTGGCAGCGCCGCCATCTTCTTCACCCGGCCGATATCTGTGACGTTGCTGAGGATTTTCGCCGCC CTGGTGATTGGCCAGTTGGCCAAGGGGCTCCGCTCCCACAGACGGACCGCACAGGCCTGA
Upstream 100 bases:
>100_bases CCTGCTGGGCGCGGCCGGGATGTACCTCCTGTTCGTGGTGCTCCTCGGGGTGCACGTGCCCACGTCCCCCCTCGGACTGT GAAGCTAGGGAGGGAATGGC
Downstream 100 bases:
>100_bases TAGACAACTCGGAATTCGGATGAGGAGGAGGATCCTTGGTATGAGGCATTTCCACAAGGTGTTGGGTGTCGTTCTCGTCG CCGGCATCGTCTTCATGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: ORFZ2 [H]
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MESLQGLMQGFSVAMLPTNLLFAFLGCLLGTAIGVLPGLGPAGTISLLLPVVYSMGSSATTLIFLAGIYYGSMYGGSTTS ILLNLPGEAASVITAIDGYEMAKKGRAGAALSIAAIGSFLAGTLAVVGLTFVAPPVAEFALDFGPPEYFSLTLLGLFLAV FLSGGSMAKGVVLLAAGVLLASVGLDPVTGKARFTFGSVAMQSGFDFTTLAMGVFGLGEIFFNLEKADFMGTITAKIGRL LPTAKEWAESRWAIVRGAVLGFAVGVLPGGGGVLGSLASYATERKLSKHPEEFGKGAIAGVAGPESANNAASTASFIPLL TLGIPTNSSMAVIFAALLIQGVTPGPFLITEHPDVFWGVIASMYIGNLMLLVLNLPLVGVWVRLLKVPFNILGPLVVLLT VIGVYSTTNDVFQVFVLIGFGVLGYFMRKFRFDPGPLPLAFVLAPTIENSLRQSLIMSRGSAAIFFTRPISVTLLRIFAA LVIGQLAKGLRSHRRTAQA
Sequences:
>Translated_499_residues MESLQGLMQGFSVAMLPTNLLFAFLGCLLGTAIGVLPGLGPAGTISLLLPVVYSMGSSATTLIFLAGIYYGSMYGGSTTS ILLNLPGEAASVITAIDGYEMAKKGRAGAALSIAAIGSFLAGTLAVVGLTFVAPPVAEFALDFGPPEYFSLTLLGLFLAV FLSGGSMAKGVVLLAAGVLLASVGLDPVTGKARFTFGSVAMQSGFDFTTLAMGVFGLGEIFFNLEKADFMGTITAKIGRL LPTAKEWAESRWAIVRGAVLGFAVGVLPGGGGVLGSLASYATERKLSKHPEEFGKGAIAGVAGPESANNAASTASFIPLL TLGIPTNSSMAVIFAALLIQGVTPGPFLITEHPDVFWGVIASMYIGNLMLLVLNLPLVGVWVRLLKVPFNILGPLVVLLT VIGVYSTTNDVFQVFVLIGFGVLGYFMRKFRFDPGPLPLAFVLAPTIENSLRQSLIMSRGSAAIFFTRPISVTLLRIFAA LVIGQLAKGLRSHRRTAQA >Mature_499_residues MESLQGLMQGFSVAMLPTNLLFAFLGCLLGTAIGVLPGLGPAGTISLLLPVVYSMGSSATTLIFLAGIYYGSMYGGSTTS ILLNLPGEAASVITAIDGYEMAKKGRAGAALSIAAIGSFLAGTLAVVGLTFVAPPVAEFALDFGPPEYFSLTLLGLFLAV FLSGGSMAKGVVLLAAGVLLASVGLDPVTGKARFTFGSVAMQSGFDFTTLAMGVFGLGEIFFNLEKADFMGTITAKIGRL LPTAKEWAESRWAIVRGAVLGFAVGVLPGGGGVLGSLASYATERKLSKHPEEFGKGAIAGVAGPESANNAASTASFIPLL TLGIPTNSSMAVIFAALLIQGVTPGPFLITEHPDVFWGVIASMYIGNLMLLVLNLPLVGVWVRLLKVPFNILGPLVVLLT VIGVYSTTNDVFQVFVLIGFGVLGYFMRKFRFDPGPLPLAFVLAPTIENSLRQSLIMSRGSAAIFFTRPISVTLLRIFAA LVIGQLAKGLRSHRRTAQA
Specific function: Unknown
COG id: COG3333
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002823 [H]
Pfam domain/function: PF01970 DUF112 [H]
EC number: NA
Molecular weight: Translated: 51903; Mature: 51903
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLQGLMQGFSVAMLPTNLLFAFLGCLLGTAIGVLPGLGPAGTISLLLPVVYSMGSSAT CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH TLIFLAGIYYGSMYGGSTTSILLNLPGEAASVITAIDGYEMAKKGRAGAALSIAAIGSFL HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH AGTLAVVGLTFVAPPVAEFALDFGPPEYFSLTLLGLFLAVFLSGGSMAKGVVLLAAGVLL HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH ASVGLDPVTGKARFTFGSVAMQSGFDFTTLAMGVFGLGEIFFNLEKADFMGTITAKIGRL HHCCCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPTAKEWAESRWAIVRGAVLGFAVGVLPGGGGVLGSLASYATERKLSKHPEEFGKGAIAG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEE VAGPESANNAASTASFIPLLTLGIPTNSSMAVIFAALLIQGVTPGPFLITEHPDVFWGVI CCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH ASMYIGNLMLLVLNLPLVGVWVRLLKVPFNILGPLVVLLTVIGVYSTTNDVFQVFVLIGF HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH GVLGYFMRKFRFDPGPLPLAFVLAPTIENSLRQSLIMSRGSAAIFFTRPISVTLLRIFAA HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH LVIGQLAKGLRSHRRTAQA HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MESLQGLMQGFSVAMLPTNLLFAFLGCLLGTAIGVLPGLGPAGTISLLLPVVYSMGSSAT CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH TLIFLAGIYYGSMYGGSTTSILLNLPGEAASVITAIDGYEMAKKGRAGAALSIAAIGSFL HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH AGTLAVVGLTFVAPPVAEFALDFGPPEYFSLTLLGLFLAVFLSGGSMAKGVVLLAAGVLL HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH ASVGLDPVTGKARFTFGSVAMQSGFDFTTLAMGVFGLGEIFFNLEKADFMGTITAKIGRL HHCCCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPTAKEWAESRWAIVRGAVLGFAVGVLPGGGGVLGSLASYATERKLSKHPEEFGKGAIAG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEE VAGPESANNAASTASFIPLLTLGIPTNSSMAVIFAALLIQGVTPGPFLITEHPDVFWGVI CCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH ASMYIGNLMLLVLNLPLVGVWVRLLKVPFNILGPLVVLLTVIGVYSTTNDVFQVFVLIGF HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH GVLGYFMRKFRFDPGPLPLAFVLAPTIENSLRQSLIMSRGSAAIFFTRPISVTLLRIFAA HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH LVIGQLAKGLRSHRRTAQA HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8672817 [H]