| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893366
Identifier: 51893366
GI number: 51893366
Start: 2394798
End: 2395838
Strand: Reverse
Name: 51893366
Synonym: STH2228
Alternate gene names: NA
Gene position: 2395838-2394798 (Counterclockwise)
Preceding gene: 51893367
Following gene: 51893365
Centisome position: 67.18
GC content: 66.67
Gene sequence:
>1041_bases ATGGCTGGCTGTGGCAGTTCGGGCACGAGCACCGACGCCACGTCCCCGGCCAGCACGGAACAGAGCGCCACACACGGGAC CCCCGCCGAGCAGACCGCCAGCCAGCAGACCTCCACTGAGCCGGCCGGCCAGGAGGAGACCAAGACCTGGAAGCCGGAGA AGGCCGTGACCCTCATCGTGCCGTACTCGGCCGGCGGCTCCACCGACGTACTCGCCCGCGTGGTGGAGAAGATCTGGCCC AAGTACGTCGACCAGCCCCTGACCGTGGTGAACCAGCCCGGCGGCAGCGGTTGGGTGGGCCGTGAGGCCGTGGCCAAGGC CGCGCCCGACGGGTACACCCTGATGATCGGCTACGGCTCCGGCGAGGACCTGATCGCTCCGCAACTGCGCGAGGCCCCGT TCGACCCGATCAACGACTTCCAGCCGATCGCCCTGCTCTCCAACCACGCCATCCTGTTCGCGACGTCCACCGAGTCTGGT TACGAGACCATGGAGCAGCTACTGGAGGCGGCCAAGTCCGCTGAGGTCACGGCGGCCCTGTCCGGCGTCGGCAACCTGAT GGACATTACCGTGCGCGCCGTGGCCAAGGCGGCCGGGGGCGAGATCACCGGCGTGCCGTTCGCCGGCGGCGGTCCGGCTA CCACCGCCATGGTCGGCAACCAGGTCGATTTCGGTCCCGGCCACCAGTCTGAGTTGATGCCGCATGTGAAGGGCGGCCGG TTACGGATCCTGGCCGTCGCCAGCCCCGAACGGGAGTCCATGCTGGCTGACGTGCCGACCCTGAAGGAGCTGGGCATCGA CTACGTTAACGCCGGCTCGCTGAAGGGCATCGCCGCCCCAGCCGGGCTGCCCGAGGAGATCCTGGCCTACTACGAGGACC TGTTCGCGAAGATTACCTCTGATCCGGAGTTCCAGCAAGCCATGGCCGATGTCTACCAGCCGGTGAACTACAAGAATCCC GAGGAGTTCGGGGCCATGATCAGGGAATACTACGAGATGTACAGCCGTTTGATCAAGGAGCTGGACATCCACGTCGAGTG A
Upstream 100 bases:
>100_bases GCCTGATAGACAACTCGGAATTCGGATGAGGAGGAGGATCCTTGGTATGAGGCATTTCCACAAGGTGTTGGGTGTCGTTC TCGTCGCCGGCATCGTCTTC
Downstream 100 bases:
>100_bases GGGCTGAACCCGACTCCGTTTCGCGCGCTGGCGCTCGCGCCCGGATTCCCTGATGGGGCCCGGGCGCGTTCGCATGCGTT GGATTCCGTCCAATCGGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MAGCGSSGTSTDATSPASTEQSATHGTPAEQTASQQTSTEPAGQEETKTWKPEKAVTLIVPYSAGGSTDVLARVVEKIWP KYVDQPLTVVNQPGGSGWVGREAVAKAAPDGYTLMIGYGSGEDLIAPQLREAPFDPINDFQPIALLSNHAILFATSTESG YETMEQLLEAAKSAEVTAALSGVGNLMDITVRAVAKAAGGEITGVPFAGGGPATTAMVGNQVDFGPGHQSELMPHVKGGR LRILAVASPERESMLADVPTLKELGIDYVNAGSLKGIAAPAGLPEEILAYYEDLFAKITSDPEFQQAMADVYQPVNYKNP EEFGAMIREYYEMYSRLIKELDIHVE
Sequences:
>Translated_346_residues MAGCGSSGTSTDATSPASTEQSATHGTPAEQTASQQTSTEPAGQEETKTWKPEKAVTLIVPYSAGGSTDVLARVVEKIWP KYVDQPLTVVNQPGGSGWVGREAVAKAAPDGYTLMIGYGSGEDLIAPQLREAPFDPINDFQPIALLSNHAILFATSTESG YETMEQLLEAAKSAEVTAALSGVGNLMDITVRAVAKAAGGEITGVPFAGGGPATTAMVGNQVDFGPGHQSELMPHVKGGR LRILAVASPERESMLADVPTLKELGIDYVNAGSLKGIAAPAGLPEEILAYYEDLFAKITSDPEFQQAMADVYQPVNYKNP EEFGAMIREYYEMYSRLIKELDIHVE >Mature_345_residues AGCGSSGTSTDATSPASTEQSATHGTPAEQTASQQTSTEPAGQEETKTWKPEKAVTLIVPYSAGGSTDVLARVVEKIWPK YVDQPLTVVNQPGGSGWVGREAVAKAAPDGYTLMIGYGSGEDLIAPQLREAPFDPINDFQPIALLSNHAILFATSTESGY ETMEQLLEAAKSAEVTAALSGVGNLMDITVRAVAKAAGGEITGVPFAGGGPATTAMVGNQVDFGPGHQSELMPHVKGGRL RILAVASPERESMLADVPTLKELGIDYVNAGSLKGIAAPAGLPEEILAYYEDLFAKITSDPEFQQAMADVYQPVNYKNPE EFGAMIREYYEMYSRLIKELDIHVE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 36600; Mature: 36469
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGCGSSGTSTDATSPASTEQSATHGTPAEQTASQQTSTEPAGQEETKTWKPEKAVTLIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE PYSAGGSTDVLARVVEKIWPKYVDQPLTVVNQPGGSGWVGREAVAKAAPDGYTLMIGYGS EECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHCCCCCEEEEEEECC GEDLIAPQLREAPFDPINDFQPIALLSNHAILFATSTESGYETMEQLLEAAKSAEVTAAL CCCCCCCHHHHCCCCCCCCCCCHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH SGVGNLMDITVRAVAKAAGGEITGVPFAGGGPATTAMVGNQVDFGPGHQSELMPHVKGGR HHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCC LRILAVASPERESMLADVPTLKELGIDYVNAGSLKGIAAPAGLPEEILAYYEDLFAKITS EEEEEECCCCHHHHHHCCCCHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC DPEFQQAMADVYQPVNYKNPEEFGAMIREYYEMYSRLIKELDIHVE CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AGCGSSGTSTDATSPASTEQSATHGTPAEQTASQQTSTEPAGQEETKTWKPEKAVTLIV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE PYSAGGSTDVLARVVEKIWPKYVDQPLTVVNQPGGSGWVGREAVAKAAPDGYTLMIGYGS EECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHCCCCCEEEEEEECC GEDLIAPQLREAPFDPINDFQPIALLSNHAILFATSTESGYETMEQLLEAAKSAEVTAAL CCCCCCCHHHHCCCCCCCCCCCHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH SGVGNLMDITVRAVAKAAGGEITGVPFAGGGPATTAMVGNQVDFGPGHQSELMPHVKGGR HHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCC LRILAVASPERESMLADVPTLKELGIDYVNAGSLKGIAAPAGLPEEILAYYEDLFAKITS EEEEEECCCCHHHHHHCCCCHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC DPEFQQAMADVYQPVNYKNPEEFGAMIREYYEMYSRLIKELDIHVE CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12910271; 9524276 [H]