| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893364
Identifier: 51893364
GI number: 51893364
Start: 2392311
End: 2393792
Strand: Reverse
Name: 51893364
Synonym: STH2226
Alternate gene names: NA
Gene position: 2393792-2392311 (Counterclockwise)
Preceding gene: 51893365
Following gene: 51893363
Centisome position: 67.13
GC content: 70.65
Gene sequence:
>1482_bases ATGCCGCCTCGCGCCGTCACCGCCGAGATGCCCGAGGCCAACTACCTCATCGGCCATCCCGACGGCAAGTACTACCGGCT GCTGATGCGCTGTTTCTACGAGCGGAGCCTCAGCCACATCACCTACGTGCGCACCGACGACCTGGTCGCCTTCGTACAGC AGTACCTTCCTTACGATGATGCGACTTGCCGCCAGCACCTGGACCAGATGGAGAAGTGGGGGCTGGTCACCCTCATCCCC GAACAGAGCAAGCCGGCCAACCTGATGGAGCTGCGGCAGAAGCCGCGCGTCTACCAGGCCAGCCGGATCGCCCTGCGGCT GGAGGCCCTGCGGGCGGAGCTGGAGCAGGAGGAGGGTGCGGCCTCCCTGGATCCCGCTGCGCTGGATCTGCTGGTGCAGC GGGTGCGGGAGCTCGCGGACTTCATCGAGCAGGATGGCCTCCACCGCGATGGTGCGGCGCCTGAGGCGCACCGGCTCTGG GCAGGCGTCTACGAGTCGTTCGGCGCCTTCTCCCGGCGAATTCGGGAGTACCTGGAGGACCTGCCCCGCCACCGGCCCAG GGAGGTGCTCGACTACGAGGCGTTCCGCGCCTACCGGGACCTCCTCATCCCGTACCTGCAGGACTATGCCAGGCGCCTGT TCGACCGGCGGGAGCAGCTGCGGATGCGGCTCCGCGTGCTGGCGAGGAGCAAGGAACTGCTGGCGACCACGGCGGCAGTG GTCGAGGCGCAGCAGGTGCGGGCCGACGGTTCCCGCCCCGACTTCGACCGGCAGAAGGAGCGGTTCCTGCGGGAGATCGA CGCCCTGATCGGCTACTTCGGCGACCAGGGCGACGTGGACGTGCTGCTGGAGCGGGCCCAGGCGTGGGTGTCGGAGATCA CCCGGCACGCGCGCCGTCTGTCCGAACAGCATCTGGGCGGCTCTGTACGTGAGCAGACGCTCCTGGACCTCGCCCGGCGC TTCAGCGAATGCACATCGCTGGAGCAGGCCGAGAGCCTGGCCCAGGTGGTCTTCGCCGCCACCCTTCCCCTGCACTGGCG GGGCGAGGCGCCGCCGCCGGCGGACAAAGACCCGTGGGAGGCCGAGCCGGTGACCGTGCCGCTTTACGCCGTGCGGCGCG GGCAGCGCCCGCGCCAGCAGCCCGAGGCGACTGCGGACCGCACCAGCGAGGCCCTGCAGAAGATGCTGTCCGCCAAGGCC GAGCGGGACCGGGCCGCCCAGGAGCTGGCCGAGCTCTTCGGCGACGAAAGCGAGCTGGACCTGGGCGACCTGACCGTCCG CGAGCCTCGCCAGCGGCAGCTGCTGCTCCGCCTGCTCTACAAGGCCCTGTCCCAGCAGGGGCCGGTCGGCGTGGGCTACC GGAACTGGAGCGTGACCGCCGAGGTGAAGGCCGACGCCCCGCTGGGCCGGCTGTCCGCCGCCGACGGCACGGCCACCCTT CCGCACGTCATCCTGCGGCTGCACAAAGGGGGTCCGCGCTGA
Upstream 100 bases:
>100_bases ATCGTGCGGATCGTCTCGGTCACGGCACCTGCCAGCAGGATCCGGAGGACGCGACGGGGAAACTCGATCGATAACACCAG AACCATGAAGAGGTGACCTC
Downstream 100 bases:
>100_bases TGGCCACCACCGGCGCCGCCGAACAGCGGCAGCTTGCCCTGCAGGACCTGATGGACCGCTACCTGATCAGCCAGGCCGAC GAGCCCGAGGCCTACCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MPPRAVTAEMPEANYLIGHPDGKYYRLLMRCFYERSLSHITYVRTDDLVAFVQQYLPYDDATCRQHLDQMEKWGLVTLIP EQSKPANLMELRQKPRVYQASRIALRLEALRAELEQEEGAASLDPAALDLLVQRVRELADFIEQDGLHRDGAAPEAHRLW AGVYESFGAFSRRIREYLEDLPRHRPREVLDYEAFRAYRDLLIPYLQDYARRLFDRREQLRMRLRVLARSKELLATTAAV VEAQQVRADGSRPDFDRQKERFLREIDALIGYFGDQGDVDVLLERAQAWVSEITRHARRLSEQHLGGSVREQTLLDLARR FSECTSLEQAESLAQVVFAATLPLHWRGEAPPPADKDPWEAEPVTVPLYAVRRGQRPRQQPEATADRTSEALQKMLSAKA ERDRAAQELAELFGDESELDLGDLTVREPRQRQLLLRLLYKALSQQGPVGVGYRNWSVTAEVKADAPLGRLSAADGTATL PHVILRLHKGGPR
Sequences:
>Translated_493_residues MPPRAVTAEMPEANYLIGHPDGKYYRLLMRCFYERSLSHITYVRTDDLVAFVQQYLPYDDATCRQHLDQMEKWGLVTLIP EQSKPANLMELRQKPRVYQASRIALRLEALRAELEQEEGAASLDPAALDLLVQRVRELADFIEQDGLHRDGAAPEAHRLW AGVYESFGAFSRRIREYLEDLPRHRPREVLDYEAFRAYRDLLIPYLQDYARRLFDRREQLRMRLRVLARSKELLATTAAV VEAQQVRADGSRPDFDRQKERFLREIDALIGYFGDQGDVDVLLERAQAWVSEITRHARRLSEQHLGGSVREQTLLDLARR FSECTSLEQAESLAQVVFAATLPLHWRGEAPPPADKDPWEAEPVTVPLYAVRRGQRPRQQPEATADRTSEALQKMLSAKA ERDRAAQELAELFGDESELDLGDLTVREPRQRQLLLRLLYKALSQQGPVGVGYRNWSVTAEVKADAPLGRLSAADGTATL PHVILRLHKGGPR >Mature_492_residues PPRAVTAEMPEANYLIGHPDGKYYRLLMRCFYERSLSHITYVRTDDLVAFVQQYLPYDDATCRQHLDQMEKWGLVTLIPE QSKPANLMELRQKPRVYQASRIALRLEALRAELEQEEGAASLDPAALDLLVQRVRELADFIEQDGLHRDGAAPEAHRLWA GVYESFGAFSRRIREYLEDLPRHRPREVLDYEAFRAYRDLLIPYLQDYARRLFDRREQLRMRLRVLARSKELLATTAAVV EAQQVRADGSRPDFDRQKERFLREIDALIGYFGDQGDVDVLLERAQAWVSEITRHARRLSEQHLGGSVREQTLLDLARRF SECTSLEQAESLAQVVFAATLPLHWRGEAPPPADKDPWEAEPVTVPLYAVRRGQRPRQQPEATADRTSEALQKMLSAKAE RDRAAQELAELFGDESELDLGDLTVREPRQRQLLLRLLYKALSQQGPVGVGYRNWSVTAEVKADAPLGRLSAADGTATLP HVILRLHKGGPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56446; Mature: 56315
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRAVTAEMPEANYLIGHPDGKYYRLLMRCFYERSLSHITYVRTDDLVAFVQQYLPYDD CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCC ATCRQHLDQMEKWGLVTLIPEQSKPANLMELRQKPRVYQASRIALRLEALRAELEQEEGA HHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC ASLDPAALDLLVQRVRELADFIEQDGLHRDGAAPEAHRLWAGVYESFGAFSRRIREYLED CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LPRHRPREVLDYEAFRAYRDLLIPYLQDYARRLFDRREQLRMRLRVLARSKELLATTAAV HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEAQQVRADGSRPDFDRQKERFLREIDALIGYFGDQGDVDVLLERAQAWVSEITRHARRL HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH SEQHLGGSVREQTLLDLARRFSECTSLEQAESLAQVVFAATLPLHWRGEAPPPADKDPWE HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC AEPVTVPLYAVRRGQRPRQQPEATADRTSEALQKMLSAKAERDRAAQELAELFGDESELD CCCCEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LGDLTVREPRQRQLLLRLLYKALSQQGPVGVGYRNWSVTAEVKADAPLGRLSAADGTATL CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHH PHVILRLHKGGPR HHHHHHHHCCCCC >Mature Secondary Structure PPRAVTAEMPEANYLIGHPDGKYYRLLMRCFYERSLSHITYVRTDDLVAFVQQYLPYDD CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCC ATCRQHLDQMEKWGLVTLIPEQSKPANLMELRQKPRVYQASRIALRLEALRAELEQEEGA HHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC ASLDPAALDLLVQRVRELADFIEQDGLHRDGAAPEAHRLWAGVYESFGAFSRRIREYLED CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LPRHRPREVLDYEAFRAYRDLLIPYLQDYARRLFDRREQLRMRLRVLARSKELLATTAAV HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEAQQVRADGSRPDFDRQKERFLREIDALIGYFGDQGDVDVLLERAQAWVSEITRHARRL HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH SEQHLGGSVREQTLLDLARRFSECTSLEQAESLAQVVFAATLPLHWRGEAPPPADKDPWE HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC AEPVTVPLYAVRRGQRPRQQPEATADRTSEALQKMLSAKAERDRAAQELAELFGDESELD CCCCEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LGDLTVREPRQRQLLLRLLYKALSQQGPVGVGYRNWSVTAEVKADAPLGRLSAADGTATL CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHH PHVILRLHKGGPR HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA