| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is aroE
Identifier: 51893090
GI number: 51893090
Start: 2092730
End: 2093614
Strand: Reverse
Name: aroE
Synonym: STH1952
Alternate gene names: 51893090
Gene position: 2093614-2092730 (Counterclockwise)
Preceding gene: 51893091
Following gene: 51893089
Centisome position: 58.71
GC content: 73.22
Gene sequence:
>885_bases ATGACCAAGCGTCGGAGCACATCGCGGGGTCCGGGGCGGATCCTGGGGATCCTGGGCCATCCGGTGGCGCACTCCGCCTC GCCCGCCATGCACAACGCCGCATTCGCCGCGCAGGGGATGCACGCCATGTACGGGGCCTTTGACGTCCCGCCTTCCCAGC TGGAGAAGGCGATCGCCGGGATTCGCGCGCTGGGGCTCCTGGGCGTCAACGTCACCATTCCCCACAAGGAGGCGGTCATG GCCTACCTGGACGACGTGGCCCCCACCGCCCGGCAGGTGGGTGCGGTGAACACCATCGTCAACCGGGGCGGCCGGCTGAT CGGGTACAATACCGACGGCTGGGGCTTCCTGCTCAGCCTGGAGGAGCGGGGCGTGCGGGTCGCCGGCCGGAACGCCGTGG TGCTGGGTGCGGGTGGCGCCGCCCGGGCGGTGGCCCTGCACCTGGGCATGGCCGGGGTGGCGCGCCTGACGATCATCAAC CGTTCCCGCCAGCGGGCCGAGTTCCTGGCGGCCGATCTCGCCCGGGCCAAGACCCCGGTGCGGGCGGAGGTGGCCGATCC GGGGTCGGAGGAGGCCCGGGCCGCGCTCGCGGAGGCCGGCCTGGTCGTCAACTGCACCCCTCTGGGCATGGAGCCCGACA CCGAGTCGACGCCGCTGGAGGACGTCGGGCTGCTCCCGGCCCACTGCGTGGTCTACGACACCGTGTACCGGCCGCTGGAG ACCCGCCTCCTGCGGGAGGCGCGGCAGCACGGGCTCATCACCGTCAACGGCCTGGCGATGCTGGTGCACCAGGGCGCCTG CGCCTGGGAGTACTGGTTCGGCCGGCGGGGCCCGGTGGACGTGATGCGGACGGCCGCGCTGGCGGCCCTGGAGGGACAGC CATGA
Upstream 100 bases:
>100_bases GGCCAGCCGGTCTGCCTATAGTTGGCAGGTTCCGCCGGGGGCACCGCCGAAAGGAGTAAGGTGAGAAGAGACCCGCTGTG GCGCGGGAGGGGGGACTGGG
Downstream 100 bases:
>100_bases GCGGGCAGGCGTGGCCCGCCGCCCTCCTGGGCGTGGCCCTGGGGGCGGCCCTGGGCTATCTGGGTGTGCGGTTCTCCCCC CGCTGGCTGACCCGGCCGGC
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MTKRRSTSRGPGRILGILGHPVAHSASPAMHNAAFAAQGMHAMYGAFDVPPSQLEKAIAGIRALGLLGVNVTIPHKEAVM AYLDDVAPTARQVGAVNTIVNRGGRLIGYNTDGWGFLLSLEERGVRVAGRNAVVLGAGGAARAVALHLGMAGVARLTIIN RSRQRAEFLAADLARAKTPVRAEVADPGSEEARAALAEAGLVVNCTPLGMEPDTESTPLEDVGLLPAHCVVYDTVYRPLE TRLLREARQHGLITVNGLAMLVHQGACAWEYWFGRRGPVDVMRTAALAALEGQP
Sequences:
>Translated_294_residues MTKRRSTSRGPGRILGILGHPVAHSASPAMHNAAFAAQGMHAMYGAFDVPPSQLEKAIAGIRALGLLGVNVTIPHKEAVM AYLDDVAPTARQVGAVNTIVNRGGRLIGYNTDGWGFLLSLEERGVRVAGRNAVVLGAGGAARAVALHLGMAGVARLTIIN RSRQRAEFLAADLARAKTPVRAEVADPGSEEARAALAEAGLVVNCTPLGMEPDTESTPLEDVGLLPAHCVVYDTVYRPLE TRLLREARQHGLITVNGLAMLVHQGACAWEYWFGRRGPVDVMRTAALAALEGQP >Mature_293_residues TKRRSTSRGPGRILGILGHPVAHSASPAMHNAAFAAQGMHAMYGAFDVPPSQLEKAIAGIRALGLLGVNVTIPHKEAVMA YLDDVAPTARQVGAVNTIVNRGGRLIGYNTDGWGFLLSLEERGVRVAGRNAVVLGAGGAARAVALHLGMAGVARLTIINR SRQRAEFLAADLARAKTPVRAEVADPGSEEARAALAEAGLVVNCTPLGMEPDTESTPLEDVGLLPAHCVVYDTVYRPLET RLLREARQHGLITVNGLAMLVHQGACAWEYWFGRRGPVDVMRTAALAALEGQP
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family
Homologues:
Organism=Escherichia coli, GI1787983, Length=277, Percent_Identity=36.4620938628159, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1789675, Length=261, Percent_Identity=34.4827586206897, Blast_Score=106, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6320332, Length=276, Percent_Identity=31.5217391304348, Blast_Score=112, Evalue=8e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): AROE_SYMTH (Q67N06)
Other databases:
- EMBL: AP006840 - RefSeq: YP_075781.1 - HSSP: Q9SQT8 - ProteinModelPortal: Q67N06 - SMR: Q67N06 - GeneID: 2980928 - GenomeReviews: AP006840_GR - KEGG: sth:STH1952 - NMPDR: fig|292459.1.peg.1882 - HOGENOM: HBG553408 - OMA: QKANING - BioCyc: STHE292459:STH1952-MONOMER - BRENDA: 1.1.1.25 - GO: GO:0005737 - HAMAP: MF_00222 - InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR00507
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N
EC number: =1.1.1.25
Molecular weight: Translated: 31067; Mature: 30936
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: ACT_SITE 76-76
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRRSTSRGPGRILGILGHPVAHSASPAMHNAAFAAQGMHAMYGAFDVPPSQLEKAIAG CCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHH IRALGLLGVNVTIPHKEAVMAYLDDVAPTARQVGAVNTIVNRGGRLIGYNTDGWGFLLSL HHHHHEEEEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEE EERGVRVAGRNAVVLGAGGAARAVALHLGMAGVARLTIINRSRQRAEFLAADLARAKTPV CCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCC RAEVADPGSEEARAALAEAGLVVNCTPLGMEPDTESTPLEDVGLLPAHCVVYDTVYRPLE EEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH TRLLREARQHGLITVNGLAMLVHQGACAWEYWFGRRGPVDVMRTAALAALEGQP HHHHHHHHHCCCEEEHHHHEEHHCCCEEEHHHCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TKRRSTSRGPGRILGILGHPVAHSASPAMHNAAFAAQGMHAMYGAFDVPPSQLEKAIAG CCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHH IRALGLLGVNVTIPHKEAVMAYLDDVAPTARQVGAVNTIVNRGGRLIGYNTDGWGFLLSL HHHHHEEEEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEE EERGVRVAGRNAVVLGAGGAARAVALHLGMAGVARLTIINRSRQRAEFLAADLARAKTPV CCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCC RAEVADPGSEEARAALAEAGLVVNCTPLGMEPDTESTPLEDVGLLPAHCVVYDTVYRPLE EEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH TRLLREARQHGLITVNGLAMLVHQGACAWEYWFGRRGPVDVMRTAALAALEGQP HHHHHHHHHCCCEEEHHHHEEHHCCCEEEHHHCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA