| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893051
Identifier: 51893051
GI number: 51893051
Start: 2056140
End: 2057360
Strand: Reverse
Name: 51893051
Synonym: STH1913
Alternate gene names: NA
Gene position: 2057360-2056140 (Counterclockwise)
Preceding gene: 51893055
Following gene: 51893050
Centisome position: 57.69
GC content: 74.69
Gene sequence:
>1221_bases GTGCTCGCCGTTGTCAACGCACGGATCCTGACCGTCTCCGCCGGCGTGATCCCGTCCGGGGCCGTGCTGGTGGACGACGC CGGCCGGATCGCGGCGGTCGGGGAACGGGTCGACGTACCGGAGGGAACAGAGATGATCGATGCCGGGGGGCGGACGCTCA CCCCCGGGCTGGTGGACGGCTTCAGCCGTCTGGGGCTGATCAACGAGGGGCTCGGCTGGGCGGGCAGCGATGCCGACGAG TCCACCGATCCCAACACGGCCCACGTGCGCGCCCTGGATGGCCTCTACCCCTTCGACCGGGGCATCGCCGAAGCCCACAC CGGCGGCGTCACGACGGTGCACGTGGTGCCCGGCGGCAGCAACGTCCTGGCGGGGCAGGCGCTGGCGATCAAGCTGCGCA GGGCGGTCGCAGCCGACGACCTGGTCCTCCGCCACCCCACCGGCGTGGCGGCCGGCCTGGGCGAGCGGCCGAAGGCCGCC TACGGCGGGGAGAAGCGGATGCCGGCGACCCGCATGGGCGTCGCCGCCGTCCTGCGGGAGGCCTTGGTGAAGGCCCAGGA GTACGACCCCGGGAAGGAGCGGGACCTGCGCTGCGAGGCGCTGCTGCCCGTCCTGCGGGGCGAGCTGCCGCTGCTGGTGG AGGCGCACCGGGCGGATGACATCGTCACCGCCCTGCGGATCGGCCGGGAGTTCCGCATCCGCATCACGCTGCTGGGCGCG ACCGAGGGCCACCTGGTGGCCGACCTCATCGCCGAGGCGGGGGCCGCGGTGGCGGCGGGGCCGTCCCTGGCCGCCCGGGG CCGGCAGGAAACCCGGGACGTGGGCTTCCACCTGCCGCTTGCGCTGCACCGGCACGGGGTGCCCACCGCGATCGTCACCG GCCATCCCCAGCTGGACCAACTGTACCTGAACGTCGCCGCCGCCCTGGCCGTGCGCGAGGGGCTGATGCCGGAGGAGGCG CTCCGGGCGGTCACCCTGACCCCGGCGGAGATCCTGGGCGTGGCGGACCGGGTCGGCAGCATCGCCCCCGGCAGAGACGC CGACCTGGTGCTCTGGGACGGCGACCCGCTGGAGCTCACCACCCGGGTGGCCTGGACGATGGTGGAGGGCAGGGTGGTCT ACATGGATGACGACCGCGGGAGCGCCCACGGCGGCTGGGGACACGACGGACGGGAAGGCCCGGAGCCGGGCCGGCCCTGC GGGGAGGTGAACGGGCGATGA
Upstream 100 bases:
>100_bases CAGGGCGTCCGCCCGAGGGCGCAGGTCTACGGCCCCTGGAGGGATGGTTAACCGCACGAAGAATCATTGGAGCACAGGCC ACAGCGAGAGGAGGAGCGCG
Downstream 100 bases:
>100_bases CCAAGCTGGCGATCACCGGTGCGACGGTCTACCCCATCAGCCGGCCGCCCATGGCAGGCGCGACGCTGCTGGTGGGCGAC GGGAAGATCCTGGCGGTGGG
Product: putative amidohydrolase
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Amidohydrolase Imidazolonepropionase; Imidazolonepropionase; Imidazolonepropionase And Related Amidohydrolases; Dihydroorotase; Metal-Dependent Hydrolase Superfamily Protein; Amidohydrolase-Like Domain-Containing Protein; Metallo-Dependent Hydrolase; Secreted; N-Acetylglucosamine-6-Phosphate Deacetylase; Amidohodrolase; Imidazolonepropionase Or Related Amidohydrolase; Imidazolone-5-Propionate Hydrolase; Aminohydrolase; Amidohydrolase Protein
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MLAVVNARILTVSAGVIPSGAVLVDDAGRIAAVGERVDVPEGTEMIDAGGRTLTPGLVDGFSRLGLINEGLGWAGSDADE STDPNTAHVRALDGLYPFDRGIAEAHTGGVTTVHVVPGGSNVLAGQALAIKLRRAVAADDLVLRHPTGVAAGLGERPKAA YGGEKRMPATRMGVAAVLREALVKAQEYDPGKERDLRCEALLPVLRGELPLLVEAHRADDIVTALRIGREFRIRITLLGA TEGHLVADLIAEAGAAVAAGPSLAARGRQETRDVGFHLPLALHRHGVPTAIVTGHPQLDQLYLNVAAALAVREGLMPEEA LRAVTLTPAEILGVADRVGSIAPGRDADLVLWDGDPLELTTRVAWTMVEGRVVYMDDDRGSAHGGWGHDGREGPEPGRPC GEVNGR
Sequences:
>Translated_406_residues MLAVVNARILTVSAGVIPSGAVLVDDAGRIAAVGERVDVPEGTEMIDAGGRTLTPGLVDGFSRLGLINEGLGWAGSDADE STDPNTAHVRALDGLYPFDRGIAEAHTGGVTTVHVVPGGSNVLAGQALAIKLRRAVAADDLVLRHPTGVAAGLGERPKAA YGGEKRMPATRMGVAAVLREALVKAQEYDPGKERDLRCEALLPVLRGELPLLVEAHRADDIVTALRIGREFRIRITLLGA TEGHLVADLIAEAGAAVAAGPSLAARGRQETRDVGFHLPLALHRHGVPTAIVTGHPQLDQLYLNVAAALAVREGLMPEEA LRAVTLTPAEILGVADRVGSIAPGRDADLVLWDGDPLELTTRVAWTMVEGRVVYMDDDRGSAHGGWGHDGREGPEPGRPC GEVNGR >Mature_406_residues MLAVVNARILTVSAGVIPSGAVLVDDAGRIAAVGERVDVPEGTEMIDAGGRTLTPGLVDGFSRLGLINEGLGWAGSDADE STDPNTAHVRALDGLYPFDRGIAEAHTGGVTTVHVVPGGSNVLAGQALAIKLRRAVAADDLVLRHPTGVAAGLGERPKAA YGGEKRMPATRMGVAAVLREALVKAQEYDPGKERDLRCEALLPVLRGELPLLVEAHRADDIVTALRIGREFRIRITLLGA TEGHLVADLIAEAGAAVAAGPSLAARGRQETRDVGFHLPLALHRHGVPTAIVTGHPQLDQLYLNVAAALAVREGLMPEEA LRAVTLTPAEILGVADRVGSIAPGRDADLVLWDGDPLELTTRVAWTMVEGRVVYMDDDRGSAHGGWGHDGREGPEPGRPC GEVNGR
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42463; Mature: 42463
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAVVNARILTVSAGVIPSGAVLVDDAGRIAAVGERVDVPEGTEMIDAGGRTLTPGLVDG CEEEEEEEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCHHECCCCCEECCHHHHH FSRLGLINEGLGWAGSDADESTDPNTAHVRALDGLYPFDRGIAEAHTGGVTTVHVVPGGS HHHHCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCEEEEEEECCCC NVLAGQALAIKLRRAVAADDLVLRHPTGVAAGLGERPKAAYGGEKRMPATRMGVAAVLRE CEECCHHHHHHHHHHHHHCCEEEECCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ALVKAQEYDPGKERDLRCEALLPVLRGELPLLVEAHRADDIVTALRIGREFRIRITLLGA HHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCEEEEEEEEEEC TEGHLVADLIAEAGAAVAAGPSLAARGRQETRDVGFHLPLALHRHGVPTAIVTGHPQLDQ CCCHHHHHHHHHCCCCEECCCHHHHCCCHHHHHCCEECCHHHHCCCCCEEEEECCCCHHH LYLNVAAALAVREGLMPEEALRAVTLTPAEILGVADRVGSIAPGRDADLVLWDGDPLELT HHHHHHHHHHHHHCCCCHHHHHEEECCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEE TRVAWTMVEGRVVYMDDDRGSAHGGWGHDGREGPEPGRPCGEVNGR HEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLAVVNARILTVSAGVIPSGAVLVDDAGRIAAVGERVDVPEGTEMIDAGGRTLTPGLVDG CEEEEEEEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCHHECCCCCEECCHHHHH FSRLGLINEGLGWAGSDADESTDPNTAHVRALDGLYPFDRGIAEAHTGGVTTVHVVPGGS HHHHCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCEEEEEEECCCC NVLAGQALAIKLRRAVAADDLVLRHPTGVAAGLGERPKAAYGGEKRMPATRMGVAAVLRE CEECCHHHHHHHHHHHHHCCEEEECCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ALVKAQEYDPGKERDLRCEALLPVLRGELPLLVEAHRADDIVTALRIGREFRIRITLLGA HHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCEEEEEEEEEEC TEGHLVADLIAEAGAAVAAGPSLAARGRQETRDVGFHLPLALHRHGVPTAIVTGHPQLDQ CCCHHHHHHHHHCCCCEECCCHHHHCCCHHHHHCCEECCHHHHCCCCCEEEEECCCCHHH LYLNVAAALAVREGLMPEEALRAVTLTPAEILGVADRVGSIAPGRDADLVLWDGDPLELT HHHHHHHHHHHHHCCCCHHHHHEEECCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEE TRVAWTMVEGRVVYMDDDRGSAHGGWGHDGREGPEPGRPCGEVNGR HEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA