| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is spoIIIAF
Identifier: 51892995
GI number: 51892995
Start: 1999237
End: 1999887
Strand: Reverse
Name: spoIIIAF
Synonym: STH1857
Alternate gene names: NA
Gene position: 1999887-1999237 (Counterclockwise)
Preceding gene: 51892996
Following gene: 51892994
Centisome position: 56.08
GC content: 73.58
Gene sequence:
>651_bases ATGGCCGCGCTGACGGAGTGGGTGCGGGGCCTGGTGGTGCTGGTGGTGCTGGCCTCGCTTCTGGAGATGCTCCTGCCCAT GGGCGGGATGAAGCGCTTCGTACGGCTGGCCATGGGGCTGGTGATCATGCTGGGAATCGTGCGGCCGATCCTGGGCCTCT TGGGCGGACAGGTCGCCGTCGACCCGGAGCCCTGGTTGGAGCCCACGACCTCGTTGCCCAGCGTGTCCGAGATTGCCCGG CAGGCCGAGCGCTTCCAGGCGCGCACGCAAGCCTTGCTGCTGGAGGAGCTGCAGGACCGGATCCGGCGCGCGGCCGAGGA GGCGGCCCGTTCGGTGGAGGGGGTGGCCGAGGCGGCCGCGGCGGTGGAGCTGGCCGGTGGGCCCCGGCTGGAGACCGTGA GCCTCGAGCGGGTGACGGTGACCGTGGTGCTCGGTTCCCGCTTCGGCCAGGTGCGCCCCGTGGCGCCGGTCCGGATCGGC GGGGAGGAGCAGGCGGCCGGAGGCGGGGCGGGCACCCGGGCACGGGCGCCGACGCCCGCGGAGACGCCCCTGGCGGAAAC GGTTCGGCGGCAGGTGGCCGAACAGCTGGGTCTGACCGACGCAAGCCAGGTGACCGTTTGGATCGAGAGCGTGGACGCGG CGGGGAGGTAG
Upstream 100 bases:
>100_bases ATGCTCTTCGCGGCGGTGGGCATGGTCGCCCTGATGTTCTTCATCTCGGTGGTGGTCATCGTGGGTTCGGCCAACGTGGC CGTGATGGTGAGGTGAGGCC
Downstream 100 bases:
>100_bases TGGCATGGGTGAGCGGAAGGCGCCGGGGAACGGCCCCGGCAGCCCGTGGAGCTGGCTGGGGCTCGGGCTCTCGAAGGAGC AGGCGAAGCTGGTGCCCTTG
Product: stage III sporulation protein AF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MAALTEWVRGLVVLVVLASLLEMLLPMGGMKRFVRLAMGLVIMLGIVRPILGLLGGQVAVDPEPWLEPTTSLPSVSEIAR QAERFQARTQALLLEELQDRIRRAAEEAARSVEGVAEAAAAVELAGGPRLETVSLERVTVTVVLGSRFGQVRPVAPVRIG GEEQAAGGGAGTRARAPTPAETPLAETVRRQVAEQLGLTDASQVTVWIESVDAAGR
Sequences:
>Translated_216_residues MAALTEWVRGLVVLVVLASLLEMLLPMGGMKRFVRLAMGLVIMLGIVRPILGLLGGQVAVDPEPWLEPTTSLPSVSEIAR QAERFQARTQALLLEELQDRIRRAAEEAARSVEGVAEAAAAVELAGGPRLETVSLERVTVTVVLGSRFGQVRPVAPVRIG GEEQAAGGGAGTRARAPTPAETPLAETVRRQVAEQLGLTDASQVTVWIESVDAAGR >Mature_215_residues AALTEWVRGLVVLVVLASLLEMLLPMGGMKRFVRLAMGLVIMLGIVRPILGLLGGQVAVDPEPWLEPTTSLPSVSEIARQ AERFQARTQALLLEELQDRIRRAAEEAARSVEGVAEAAAAVELAGGPRLETVSLERVTVTVVLGSRFGQVRPVAPVRIGG EEQAAGGGAGTRARAPTPAETPLAETVRRQVAEQLGLTDASQVTVWIESVDAAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22856; Mature: 22725
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALTEWVRGLVVLVVLASLLEMLLPMGGMKRFVRLAMGLVIMLGIVRPILGLLGGQVAV CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE DPEPWLEPTTSLPSVSEIARQAERFQARTQALLLEELQDRIRRAAEEAARSVEGVAEAAA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVELAGGPRLETVSLERVTVTVVLGSRFGQVRPVAPVRIGGEEQAAGGGAGTRARAPTPA HHHHCCCCCEEEEEEHHEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC ETPLAETVRRQVAEQLGLTDASQVTVWIESVDAAGR CCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure AALTEWVRGLVVLVVLASLLEMLLPMGGMKRFVRLAMGLVIMLGIVRPILGLLGGQVAV CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE DPEPWLEPTTSLPSVSEIARQAERFQARTQALLLEELQDRIRRAAEEAARSVEGVAEAAA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVELAGGPRLETVSLERVTVTVVLGSRFGQVRPVAPVRIGGEEQAAGGGAGTRARAPTPA HHHHCCCCCEEEEEEHHEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC ETPLAETVRRQVAEQLGLTDASQVTVWIESVDAAGR CCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA