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The map label for this gene is ymdB [H]

Identifier: 51892915

GI number: 51892915

Start: 1921286

End: 1922071

Strand: Reverse

Name: ymdB [H]

Synonym: STH1777

Alternate gene names: 51892915

Gene position: 1922071-1921286 (Counterclockwise)

Preceding gene: 51892916

Following gene: 51892914

Centisome position: 53.9

GC content: 66.28

Gene sequence:

>786_bases
GTGGGTCGGGAGGTGGTGGCGCGGCGGCTGACCCCGCTGGTGAAGGAGACCGGCGCGGATGCGGTGATCGTCAACGGTGA
GAATGCAGCGGGAGGCAAGGGCATCAGCGCGCAGATCTGCCAGGAGCTGTTCTCACTGGGCGTCGACGTGATCACGCTGG
GCAACCACGCCTTCGACAAGCGGGAGATCGCCACATATATCGATGGGGAACCACGCCTGATCCGCCCCCTGAACTACCCT
CCGGGGACACCGGGAGCGGGTTCGTACATCGTCCGCCGCGGGGGCAGGCCCCTGCTGGCGGTGGTTCAGGTGCAGGGGCG
GGTGTACTCTCCGCAGCTGCTGGAGGACCCGTTCCGGGCCGTGGAGGGGGAAGTGGAGCGGCTCAGGCAGAGCACGCCGG
TGATCATTGTCGACTGTCACGCGGAGGCCACGTCTGAGAAGCAGGCGATGGGCTGGTTTCTGGACGGTCAGGTGAGCGCC
GTCATCGGCACGCACACCCATGTGCAGACGGCGGACGAGGTCATCCTGCCCGGGGGGACGGCCTACATGACCGACGTGGG
CATGTGTGGTCCCTGGGTGTCGGTGATCGGTGCCGACCGCGAGCTGGTGCTGGAGCGGTTCCTGACGCAGCGTCCCGTTC
GGCTGGAGGCTGCCCGGGGGCCGGCGATCCTGTCGGCGGTGCTCATCGAGGTGGATGAAGCGACCGGCAAGGCCACCGGC
ATCCAGCGAATCTTGGAAAGAGAAGTGGCTACAGAACCACTTGCTAGTCTCTTTGGAAGATGGTAG

Upstream 100 bases:

>100_bases
CGGGTATAATAAAGCATATCCCAAACGGTGGGAAAAGCGGGCTATAGACTGGAGGCGCGGCGCCTTGCGCATTTTGTTCT
TCGGTGACGTATACGGTCGA

Downstream 100 bases:

>100_bases
GATATTAGCAACTCATCAACCACCAAATACCAGTGGAGGGGACATTGGTTATGGAAGTGCTGAAGGTGTCGGCGAAGTCG
AGCCCGAACGCAGTGGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MGREVVARRLTPLVKETGADAVIVNGENAAGGKGISAQICQELFSLGVDVITLGNHAFDKREIATYIDGEPRLIRPLNYP
PGTPGAGSYIVRRGGRPLLAVVQVQGRVYSPQLLEDPFRAVEGEVERLRQSTPVIIVDCHAEATSEKQAMGWFLDGQVSA
VIGTHTHVQTADEVILPGGTAYMTDVGMCGPWVSVIGADRELVLERFLTQRPVRLEAARGPAILSAVLIEVDEATGKATG
IQRILEREVATEPLASLFGRW

Sequences:

>Translated_261_residues
MGREVVARRLTPLVKETGADAVIVNGENAAGGKGISAQICQELFSLGVDVITLGNHAFDKREIATYIDGEPRLIRPLNYP
PGTPGAGSYIVRRGGRPLLAVVQVQGRVYSPQLLEDPFRAVEGEVERLRQSTPVIIVDCHAEATSEKQAMGWFLDGQVSA
VIGTHTHVQTADEVILPGGTAYMTDVGMCGPWVSVIGADRELVLERFLTQRPVRLEAARGPAILSAVLIEVDEATGKATG
IQRILEREVATEPLASLFGRW
>Mature_260_residues
GREVVARRLTPLVKETGADAVIVNGENAAGGKGISAQICQELFSLGVDVITLGNHAFDKREIATYIDGEPRLIRPLNYPP
GTPGAGSYIVRRGGRPLLAVVQVQGRVYSPQLLEDPFRAVEGEVERLRQSTPVIIVDCHAEATSEKQAMGWFLDGQVSAV
IGTHTHVQTADEVILPGGTAYMTDVGMCGPWVSVIGADRELVLERFLTQRPVRLEAARGPAILSAVLIEVDEATGKATGI
QRILEREVATEPLASLFGRW

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28116; Mature: 27984

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGREVVARRLTPLVKETGADAVIVNGENAAGGKGISAQICQELFSLGVDVITLGNHAFDK
CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCH
REIATYIDGEPRLIRPLNYPPGTPGAGSYIVRRGGRPLLAVVQVQGRVYSPQLLEDPFRA
HHHHHEECCCCCEEECCCCCCCCCCCCCHHEECCCCCEEEEEEECCCCCCCHHHHHHHHH
VEGEVERLRQSTPVIIVDCHAEATSEKQAMGWFLDGQVSAVIGTHTHVQTADEVILPGGT
HHHHHHHHHCCCCEEEEECCCCCCCCHHHHCEEECCCEEEEEECCCCCCCCCCEEECCCC
AYMTDVGMCGPWVSVIGADRELVLERFLTQRPVRLEAARGPAILSAVLIEVDEATGKATG
EEHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCHHHH
IQRILEREVATEPLASLFGRW
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GREVVARRLTPLVKETGADAVIVNGENAAGGKGISAQICQELFSLGVDVITLGNHAFDK
CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCH
REIATYIDGEPRLIRPLNYPPGTPGAGSYIVRRGGRPLLAVVQVQGRVYSPQLLEDPFRA
HHHHHEECCCCCEEECCCCCCCCCCCCCHHEECCCCCEEEEEEECCCCCCCHHHHHHHHH
VEGEVERLRQSTPVIIVDCHAEATSEKQAMGWFLDGQVSAVIGTHTHVQTADEVILPGGT
HHHHHHHHHCCCCEEEEECCCCCCCCHHHHCEEECCCEEEEEECCCCCCCCCCEEECCCC
AYMTDVGMCGPWVSVIGADRELVLERFLTQRPVRLEAARGPAILSAVLIEVDEATGKATG
EEHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCHHHH
IQRILEREVATEPLASLFGRW
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]