| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892708
Identifier: 51892708
GI number: 51892708
Start: 1708037
End: 1709635
Strand: Reverse
Name: 51892708
Synonym: STH1570
Alternate gene names: NA
Gene position: 1709635-1708037 (Counterclockwise)
Preceding gene: 51892719
Following gene: 51892707
Centisome position: 47.94
GC content: 71.98
Gene sequence:
>1599_bases GTGAGTGAACGGGAGGGAATCGCCATGGCAATCACTCCGGCATCCGGCCTGGCGGTCGCCAGGTTGACCGAACTCCGACC GGCCCGGTCCCACCGCCATCAGGACGGCAAGGCTATGGAAGGGTTTTGCCTGGTGACCGGCGATGCAAACTTCAGCCGGG TCACGCTGTTCGTGGAGAACGGCCGCACCCTGACCGACCGCTCCGGCCAAGGGGGCTTCTACTATGAAGGCTGGCTCGTG GGCCCCGCCGGCGTGGTGAGCCTGGGGGCGTTCAACGTGGGCCCGGACGGCAGGGGCAGCGCCACCCGCGTCGTCGCCGC GTCGCACCTCCGGCCCGGGCGGGCGGAACTGGTACGGGTGACCGTGGAGCCCTTCGGCGGCACGGCCGACGGGGGCATCG CCGTTCTGGAGGGAAGGCTCATCTGGCTGGACGCAGCCGCCGAGCCGCGGCCTGTGACGGGCATGGCGACGACGGTTTCG CAGCAGCCCACCGCGGGAGCGGCGACCGCGGTTGCGCAGCAACCGGCCACGGGAGCGCCGACCATAGTTGCGCAGCAACC GACGGCTGGAATGGCGACCCCGTGGGCGCAGCCTGCGGCGGGGCCATCGGCGGCGACCGGGCGGGGGCCTGTGGCTCCGG CCTGGTCGTCAGGGTCGACCGCCGGCAGCTCTTCCGCCTCCGGCACCGGTCAGCCCGGCCGCACGGCCGGCCCCTTCATC TCGGATCAGCCGGCCGGTACGACCGCCTCCGCCGTAGCCGATGAGCCCGCGGGCACGCACGTCTCCGTCGTGGCCGATCC GCCCGCCGGCACGACTGCCTCCGCTGACGTCGTTCCATCCCCCGGCACCACCACTCTCACCGATCAGCCCGACGGCACAT CCGTCGGAAACGCACCCGGTCTGCCCGCCACCGAATCGGTTCCGGCCCGGGCAGAGCCCTTCGCGGCGGAAGGTGAAAGC GGTCTGCGGGGTTCCCCTGGCGACCCCGACACGTGGGAAACCGCTCCCATCGTCGCGGACAGCGGCTCCGCTCCTGCCCA GTCGGCCGCGGGCGCTGTCGCAGACGTCCCGGCGCAGGAGGGCGTACACGCTTCAGGAGACCAGACGCACTCGACCGGCG CAACCGGCACGACGGACCAGGACCAGGCGCCCGCTGACGCCTCCGCTCAGGAGGAGGCCACGTCCCAGTCGCAACCGGCA CCCCGGTACGTCAATCCCCTGGCCGTGCAGGTCCAGCTCGTGCAGCGCCATCCGATGACCCCGCGCGCCACGGGCACGGC GACCCTCAACCTGCGCCGCGGCCACCTGACCCTTTCGCTGCGCGGCCTGCCCAGCCCGACGGCGCTCGGGCGAGACGGCA AGAGCGGACGCCCCTTCAATGCCTACCGCGTCTGGCTGGTCAACCAGAAGACCCAGATGCGCACCCCGGCAGGGTACTGC GAGCGCGTCTGGGGTGAGAACTTCCGCTTCGAGGCCGACGGCCTGCCGCTCAACCGCAGCGATACCATCCTGATCACCGC GGAGGACCGCTCCGTCGCCACCTCCACCGGCCATCCCGCGCCGCAGGTCCTCATCGGCACCTACGACCCGAGACTCTAA
Upstream 100 bases:
>100_bases CACACAACAGATTCCTGCCGCGTGTGACAAAATATGAACCATCGGCTGAAAAACGTCACATCACATGACCGGGAGCCGGT CCGCATAAGGTCATCTGGAA
Downstream 100 bases:
>100_bases GTCTGAACTGTCAATGCCAGCGACTACCCGCAGGGGAATGAGCATTCTGCCTTGAATCACCCCTCGGGGTGATTTGATGA GACGCTACCTGCCCATCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 532; Mature: 531
Protein sequence:
>532_residues MSEREGIAMAITPASGLAVARLTELRPARSHRHQDGKAMEGFCLVTGDANFSRVTLFVENGRTLTDRSGQGGFYYEGWLV GPAGVVSLGAFNVGPDGRGSATRVVAASHLRPGRAELVRVTVEPFGGTADGGIAVLEGRLIWLDAAAEPRPVTGMATTVS QQPTAGAATAVAQQPATGAPTIVAQQPTAGMATPWAQPAAGPSAATGRGPVAPAWSSGSTAGSSSASGTGQPGRTAGPFI SDQPAGTTASAVADEPAGTHVSVVADPPAGTTASADVVPSPGTTTLTDQPDGTSVGNAPGLPATESVPARAEPFAAEGES GLRGSPGDPDTWETAPIVADSGSAPAQSAAGAVADVPAQEGVHASGDQTHSTGATGTTDQDQAPADASAQEEATSQSQPA PRYVNPLAVQVQLVQRHPMTPRATGTATLNLRRGHLTLSLRGLPSPTALGRDGKSGRPFNAYRVWLVNQKTQMRTPAGYC ERVWGENFRFEADGLPLNRSDTILITAEDRSVATSTGHPAPQVLIGTYDPRL
Sequences:
>Translated_532_residues MSEREGIAMAITPASGLAVARLTELRPARSHRHQDGKAMEGFCLVTGDANFSRVTLFVENGRTLTDRSGQGGFYYEGWLV GPAGVVSLGAFNVGPDGRGSATRVVAASHLRPGRAELVRVTVEPFGGTADGGIAVLEGRLIWLDAAAEPRPVTGMATTVS QQPTAGAATAVAQQPATGAPTIVAQQPTAGMATPWAQPAAGPSAATGRGPVAPAWSSGSTAGSSSASGTGQPGRTAGPFI SDQPAGTTASAVADEPAGTHVSVVADPPAGTTASADVVPSPGTTTLTDQPDGTSVGNAPGLPATESVPARAEPFAAEGES GLRGSPGDPDTWETAPIVADSGSAPAQSAAGAVADVPAQEGVHASGDQTHSTGATGTTDQDQAPADASAQEEATSQSQPA PRYVNPLAVQVQLVQRHPMTPRATGTATLNLRRGHLTLSLRGLPSPTALGRDGKSGRPFNAYRVWLVNQKTQMRTPAGYC ERVWGENFRFEADGLPLNRSDTILITAEDRSVATSTGHPAPQVLIGTYDPRL >Mature_531_residues SEREGIAMAITPASGLAVARLTELRPARSHRHQDGKAMEGFCLVTGDANFSRVTLFVENGRTLTDRSGQGGFYYEGWLVG PAGVVSLGAFNVGPDGRGSATRVVAASHLRPGRAELVRVTVEPFGGTADGGIAVLEGRLIWLDAAAEPRPVTGMATTVSQ QPTAGAATAVAQQPATGAPTIVAQQPTAGMATPWAQPAAGPSAATGRGPVAPAWSSGSTAGSSSASGTGQPGRTAGPFIS DQPAGTTASAVADEPAGTHVSVVADPPAGTTASADVVPSPGTTTLTDQPDGTSVGNAPGLPATESVPARAEPFAAEGESG LRGSPGDPDTWETAPIVADSGSAPAQSAAGAVADVPAQEGVHASGDQTHSTGATGTTDQDQAPADASAQEEATSQSQPAP RYVNPLAVQVQLVQRHPMTPRATGTATLNLRRGHLTLSLRGLPSPTALGRDGKSGRPFNAYRVWLVNQKTQMRTPAGYCE RVWGENFRFEADGLPLNRSDTILITAEDRSVATSTGHPAPQVLIGTYDPRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54022; Mature: 53891
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEREGIAMAITPASGLAVARLTELRPARSHRHQDGKAMEGFCLVTGDANFSRVTLFVEN CCCCCCEEEEEECCCCCCHHHHHHHCHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEEC GRTLTDRSGQGGFYYEGWLVGPAGVVSLGAFNVGPDGRGSATRVVAASHLRPGRAELVRV CCEEECCCCCCCEEEEEEEECCHHEEEECEEECCCCCCCCCEEEEEECCCCCCCEEEEEE TVEPFGGTADGGIAVLEGRLIWLDAAAEPRPVTGMATTVSQQPTAGAATAVAQQPATGAP EEECCCCCCCCCEEEEECEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCC TIVAQQPTAGMATPWAQPAAGPSAATGRGPVAPAWSSGSTAGSSSASGTGQPGRTAGPFI EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SDQPAGTTASAVADEPAGTHVSVVADPPAGTTASADVVPSPGTTTLTDQPDGTSVGNAPG CCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC LPATESVPARAEPFAAEGESGLRGSPGDPDTWETAPIVADSGSAPAQSAAGAVADVPAQE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCEECCCHHC GVHASGDQTHSTGATGTTDQDQAPADASAQEEATSQSQPAPRYVNPLAVQVQLVQRHPMT CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEEHHCCCC PRATGTATLNLRRGHLTLSLRGLPSPTALGRDGKSGRPFNAYRVWLVNQKTQMRTPAGYC CCCCCEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHCCCCHHHH ERVWGENFRFEADGLPLNRSDTILITAEDRSVATSTGHPAPQVLIGTYDPRL HHHCCCCEEEECCCCCCCCCCEEEEEECCCEEECCCCCCCCEEEEECCCCCC >Mature Secondary Structure SEREGIAMAITPASGLAVARLTELRPARSHRHQDGKAMEGFCLVTGDANFSRVTLFVEN CCCCCEEEEEECCCCCCHHHHHHHCHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEEC GRTLTDRSGQGGFYYEGWLVGPAGVVSLGAFNVGPDGRGSATRVVAASHLRPGRAELVRV CCEEECCCCCCCEEEEEEEECCHHEEEECEEECCCCCCCCCEEEEEECCCCCCCEEEEEE TVEPFGGTADGGIAVLEGRLIWLDAAAEPRPVTGMATTVSQQPTAGAATAVAQQPATGAP EEECCCCCCCCCEEEEECEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCC TIVAQQPTAGMATPWAQPAAGPSAATGRGPVAPAWSSGSTAGSSSASGTGQPGRTAGPFI EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SDQPAGTTASAVADEPAGTHVSVVADPPAGTTASADVVPSPGTTTLTDQPDGTSVGNAPG CCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC LPATESVPARAEPFAAEGESGLRGSPGDPDTWETAPIVADSGSAPAQSAAGAVADVPAQE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCEECCCHHC GVHASGDQTHSTGATGTTDQDQAPADASAQEEATSQSQPAPRYVNPLAVQVQLVQRHPMT CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEEHHCCCC PRATGTATLNLRRGHLTLSLRGLPSPTALGRDGKSGRPFNAYRVWLVNQKTQMRTPAGYC CCCCCEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHCCCCHHHH ERVWGENFRFEADGLPLNRSDTILITAEDRSVATSTGHPAPQVLIGTYDPRL HHHCCCCEEEECCCCCCCCCCEEEEEECCCEEECCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA