| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is gpr [H]
Identifier: 51892571
GI number: 51892571
Start: 1578901
End: 1579872
Strand: Reverse
Name: gpr [H]
Synonym: STH1433
Alternate gene names: 51892571
Gene position: 1579872-1578901 (Counterclockwise)
Preceding gene: 51892574
Following gene: 51892567
Centisome position: 44.3
GC content: 68.62
Gene sequence:
>972_bases GTGCAGGCACGGGATTATCTGAGCCCCTTCACGGACCTGGCCCTGGAGGCCACCGCCGCGGCCAGGGGGGACGCCCGGAC CGAGCTGCCGGGAGTGGTGATGCGGGAGGAGCGGTACGACGTCGCCACCGTCTCCTGGGTCGAGGTGATGCCGGGCGTGG GGGAGCAGACCATCGGCAAGCCCGCCGGCAACTACGTGACCATTGACGCGCCCCAGCTCCGCAGGCGAAACCGGGATCTG CAGGAGCAGGTGGGCAAGATCCTGGTGGAGCAGTTGAACAAGCTGCTGCACCTGAAGGAGGACGACACCGTCCTCGTGGT GGGGCTGGGCAACTGGAACGCGACGCCGGACGCACTGGGGCCGCGGGTCACCGGGAAGCTGATGGTGACCCGCCATCTGC GGGAGTTCGTGCCCGCCGACGTGGCCGGGGGCCTTCGGGCGGTCGCGGCGATCGCCCCCGGGGTGCTGGGCACCACCGGC ATCGAGACCGCCGAAGTCATCCTCGGCATCGTGGAACGCATCAAGCCCGCGGTGGTCATCTGCATCGACGCGCTGGCAGC GCGGTCGGTGGAGCGCATCGGCACGACGATCCAGATCGCCGACACCGGCATCGCCCCGGGCGGGGGCATCGGCAACAAGC GGCAGGCGCTCAACCGGGAGTCCCTGGGGGTCGACGTCATCGCCATCGGCGTTCCCACCGTCGTACACGCCACGACCATC GTGCAGGACGCCTTCGAGGCCATGGCCCAGAGCTTCGCCGGCACCAAGCCCTTCTTCCAGCTGTTCAACTCCCGGGAGGA GCGGCAGAAACTGCTCAGCGAGGTGCTCTCGCCGACGGTGGGCGAGCTGGTGGTCACGCCCAAGGAGATCGACGAGCTCA CCGAGGACATGGCCAAGCTGATCGCCGGCAGCCTGAACGCGGTTCTGCACACCAGTGTCACCGCCCAGGATCTGCTGCGC TACATCAACTGA
Upstream 100 bases:
>100_bases CACACAGGCCAATCGATCCCTGCCGCGCAGGTATGCGCCGCCATTGCGCAGGAGAGAATAGGCGCAGGCGGTGTTACCCA CCGAATCGGGAGGGAAAGAT
Downstream 100 bases:
>100_bases GGAGGCAGAAGCGGTGCGCCGCTCCTGCCTCCCGTACCCGCTCAGAACTGACCGGTGGTGGTACCGCCCGCCAGCTGGGA CTCGGCGATGGCGATCATCT
Product: germination protease
Products: NA
Alternate protein names: GPR endopeptidase; Germination proteinase; Spore protease [H]
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MQARDYLSPFTDLALEATAAARGDARTELPGVVMREERYDVATVSWVEVMPGVGEQTIGKPAGNYVTIDAPQLRRRNRDL QEQVGKILVEQLNKLLHLKEDDTVLVVGLGNWNATPDALGPRVTGKLMVTRHLREFVPADVAGGLRAVAAIAPGVLGTTG IETAEVILGIVERIKPAVVICIDALAARSVERIGTTIQIADTGIAPGGGIGNKRQALNRESLGVDVIAIGVPTVVHATTI VQDAFEAMAQSFAGTKPFFQLFNSREERQKLLSEVLSPTVGELVVTPKEIDELTEDMAKLIAGSLNAVLHTSVTAQDLLR YIN
Sequences:
>Translated_323_residues MQARDYLSPFTDLALEATAAARGDARTELPGVVMREERYDVATVSWVEVMPGVGEQTIGKPAGNYVTIDAPQLRRRNRDL QEQVGKILVEQLNKLLHLKEDDTVLVVGLGNWNATPDALGPRVTGKLMVTRHLREFVPADVAGGLRAVAAIAPGVLGTTG IETAEVILGIVERIKPAVVICIDALAARSVERIGTTIQIADTGIAPGGGIGNKRQALNRESLGVDVIAIGVPTVVHATTI VQDAFEAMAQSFAGTKPFFQLFNSREERQKLLSEVLSPTVGELVVTPKEIDELTEDMAKLIAGSLNAVLHTSVTAQDLLR YIN >Mature_323_residues MQARDYLSPFTDLALEATAAARGDARTELPGVVMREERYDVATVSWVEVMPGVGEQTIGKPAGNYVTIDAPQLRRRNRDL QEQVGKILVEQLNKLLHLKEDDTVLVVGLGNWNATPDALGPRVTGKLMVTRHLREFVPADVAGGLRAVAAIAPGVLGTTG IETAEVILGIVERIKPAVVICIDALAARSVERIGTTIQIADTGIAPGGGIGNKRQALNRESLGVDVIAIGVPTVVHATTI VQDAFEAMAQSFAGTKPFFQLFNSREERQKLLSEVLSPTVGELVVTPKEIDELTEDMAKLIAGSLNAVLHTSVTAQDLLR YIN
Specific function: Initiates the rapid degradation of small, acid-soluble proteins during spore germination [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase A25 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005080 - InterPro: IPR000671 - ProDom: PD041835 [H]
Pfam domain/function: PF03418 Peptidase_A25 [H]
EC number: =3.4.24.78 [H]
Molecular weight: Translated: 34626; Mature: 34626
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQARDYLSPFTDLALEATAAARGDARTELPGVVMREERYDVATVSWVEVMPGVGEQTIGK CCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCHHCCC PAGNYVTIDAPQLRRRNRDLQEQVGKILVEQLNKLLHLKEDDTVLVVGLGNWNATPDALG CCCCEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCC PRVTGKLMVTRHLREFVPADVAGGLRAVAAIAPGVLGTTGIETAEVILGIVERIKPAVVI CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHHHH CIDALAARSVERIGTTIQIADTGIAPGGGIGNKRQALNRESLGVDVIAIGVPTVVHATTI HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHCHHHCCCEEEEECCCHHHHHHHH VQDAFEAMAQSFAGTKPFFQLFNSREERQKLLSEVLSPTVGELVVTPKEIDELTEDMAKL HHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHH IAGSLNAVLHTSVTAQDLLRYIN HHHHHHHHHHCCCCHHHHHHHCC >Mature Secondary Structure MQARDYLSPFTDLALEATAAARGDARTELPGVVMREERYDVATVSWVEVMPGVGEQTIGK CCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCHHCCC PAGNYVTIDAPQLRRRNRDLQEQVGKILVEQLNKLLHLKEDDTVLVVGLGNWNATPDALG CCCCEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCC PRVTGKLMVTRHLREFVPADVAGGLRAVAAIAPGVLGTTGIETAEVILGIVERIKPAVVI CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHHHH CIDALAARSVERIGTTIQIADTGIAPGGGIGNKRQALNRESLGVDVIAIGVPTVVHATTI HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHCHHHCCCEEEEECCCHHHHHHHH VQDAFEAMAQSFAGTKPFFQLFNSREERQKLLSEVLSPTVGELVVTPKEIDELTEDMAKL HHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHH IAGSLNAVLHTSVTAQDLLRYIN HHHHHHHHHHCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]