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The map label for this gene is rpoE [H]

Identifier: 51892313

GI number: 51892313

Start: 1306581

End: 1307135

Strand: Reverse

Name: rpoE [H]

Synonym: STH1175

Alternate gene names: 51892313

Gene position: 1307135-1306581 (Counterclockwise)

Preceding gene: 51892315

Following gene: 51892310

Centisome position: 36.65

GC content: 67.57

Gene sequence:

>555_bases
ATGCGCGAAGGCGTCGAGATGTGGGCACAGCCCGCGCTCAGCGACGACGAGCAGCTGGGACGGCTTATGGAGGTCATGGG
CGGGTCCCTCCTTTCCTACGCCAACCGCCTCCTGGGCGACCCCTTCGCTGCCGAGGAGGTCTGCCAGGACGCCATGTACA
AGGCCTGGTGCCACATGGAATCGCTGGAGCCCACCAGCCAACTGCGGGCGTGGCTGTACAAGGTGACGCGCAACGCCGCC
CTCGACGTGTTGCGCAGCCAGCGGCACCAGACCACCGCCCTGCTGACCGAGGACCTGCTGGATCCGACCCCGGGGCCGGA
GTCGGAGCTGGAGCGCAAGGCCTTCGTCGAGGCCCTGCGCGAAGCCCTGCACCGGCTGCCGCAGCACTACAACTCCGTGC
TCAGCCTGCGGCTCCTGGCCGGCTATTCGTACCGCGACATCGCCGAGGAGCTGAACCTGCCGCTGGGAACGGTGAAGAGC
CGGCTGCGCAACGGCCTGCAGTACCTCTCCCGTGAGTTGGCCAGTGTAGGGGTCGACCAGGGTTACCTCTCATGA

Upstream 100 bases:

>100_bases
TACGGCGCAGGGGGCGCCCTCTGGTCCGAAACATTCGCTAGTCCATATTGTTCTACTATGGTCTGTTTGCTGTCTGTACA
TAGAGAGGGGTTGAAGGGTC

Downstream 100 bases:

>100_bases
AAGCAAACACCCGCGGGCCCTGCGCTTCGCACCCATGAAACACGGCCCGTCGCCCGACGAGGGAAGCGGCGGACCTCCGG
TCAGGAGGTTCGCCGCTCGT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MREGVEMWAQPALSDDEQLGRLMEVMGGSLLSYANRLLGDPFAAEEVCQDAMYKAWCHMESLEPTSQLRAWLYKVTRNAA
LDVLRSQRHQTTALLTEDLLDPTPGPESELERKAFVEALREALHRLPQHYNSVLSLRLLAGYSYRDIAEELNLPLGTVKS
RLRNGLQYLSRELASVGVDQGYLS

Sequences:

>Translated_184_residues
MREGVEMWAQPALSDDEQLGRLMEVMGGSLLSYANRLLGDPFAAEEVCQDAMYKAWCHMESLEPTSQLRAWLYKVTRNAA
LDVLRSQRHQTTALLTEDLLDPTPGPESELERKAFVEALREALHRLPQHYNSVLSLRLLAGYSYRDIAEELNLPLGTVKS
RLRNGLQYLSRELASVGVDQGYLS
>Mature_184_residues
MREGVEMWAQPALSDDEQLGRLMEVMGGSLLSYANRLLGDPFAAEEVCQDAMYKAWCHMESLEPTSQLRAWLYKVTRNAA
LDVLRSQRHQTTALLTEDLLDPTPGPESELERKAFVEALREALHRLPQHYNSVLSLRLLAGYSYRDIAEELNLPLGTVKS
RLRNGLQYLSRELASVGVDQGYLS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20794; Mature: 20794

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREGVEMWAQPALSDDEQLGRLMEVMGGSLLSYANRLLGDPFAAEEVCQDAMYKAWCHME
CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SLEPTSQLRAWLYKVTRNAALDVLRSQRHQTTALLTEDLLDPTPGPESELERKAFVEALR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
EALHRLPQHYNSVLSLRLLAGYSYRDIAEELNLPLGTVKSRLRNGLQYLSRELASVGVDQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GYLS
CCCC
>Mature Secondary Structure
MREGVEMWAQPALSDDEQLGRLMEVMGGSLLSYANRLLGDPFAAEEVCQDAMYKAWCHME
CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SLEPTSQLRAWLYKVTRNAALDVLRSQRHQTTALLTEDLLDPTPGPESELERKAFVEALR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
EALHRLPQHYNSVLSLRLLAGYSYRDIAEELNLPLGTVKSRLRNGLQYLSRELASVGVDQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GYLS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]