| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is yeaH [C]
Identifier: 51892309
GI number: 51892309
Start: 1301880
End: 1303067
Strand: Reverse
Name: yeaH [C]
Synonym: STH1171
Alternate gene names: 51892309
Gene position: 1303067-1301880 (Counterclockwise)
Preceding gene: 51892310
Following gene: 51892308
Centisome position: 36.54
GC content: 69.53
Gene sequence:
>1188_bases ATGGCAGACCTGCCGTTTGTCATCTCCCGGGAGGACTGGTCCCTGCACCGCCAGGGGCAGATGGACCAGGAGCGGCACCA GGCGCGGATCCGGGAGGCCATCCGGGCCAACCTGGCCGACATCGTGAGCGACGAGGCCATTATCGCCAGCGACGGCCGCA AGGTGGTGCGGCTGCCGATCCGGGTCCTGAGGGAGTACCGGTTCCGGCTGGACTGGCAGAAGCAGCCCCGGGTGGGCGAG GCGGACGGCCCCGTCCGCCCCGGTGAGCCCGTCGGCCGGCCCGGCCGGGCAGCCGAGGCGGCCGGCGGCAGCGGCGCCGG CGACGAGGCCGGCGAAGACTGGTTCGAGACCGACGTGCCGCTGGAGGAGCTGGAGGAGCTGCTCTTCGCTGAGCTCTCCC TCCCCCACCTCGAACCCAAACAGGAGCCCCACCTGACCGTGCTGCACCACGAGTGGCGGGACGTGCGGCGCCAGGGGCTC TACGCCAATATCGACAAGAAGCGCACCTTGCTGGAAGCGATGAAGCGCAACCGGCTGGCCGGAAGGCCGCCCCTGGCGGG GATCCGCCGGGAGGACCTGCGCTTCCGGACCTGGGATGAGGCCGAGATCCCCGGAGCCAGCGCCGTGCTGATCATCATGA TGGATACCTCGGGTTCCATGGGCACGGGGGAGAAGTACATCGCCCGCAGCCTCTGCCACTGGATGGTCCGCTTCCTCCGC ACCCGGTATGAGCGGGTGAAGCTCCACTTCGTCGCCCACACCACCGAGGCGAAGGAGATGGACGAGGAGTCTTTCTTCAC CCGGGGCGAATCCGGCGGCACCCGCTGCTCCTCGGCCTACGAGTATGCCCTGCAGCTCATCGACCGGCGGTACCCGCCCG ACCGGCACAACCTCTACGCCTTCCACTTCTCCGACGGCGACAACCTCATCTCGGACAACCCCCGGGCGGTGGCCCTGCTG CGGAAGCTGCTGGAACGCTGCGCGCTGGTGGGCTACGGGCAGATCGAGACGCAGCCCCAGTACCTCTCCATGCCCTACTA CCAGCCCAACACGCTCCTCACCCTGTTCCGCGAGGAGATCGACCACCCGCGCTTCGTCACCGCCCTGATCCGGGACCGCT CGGAGATCTACGCGGCCTTGCGGGCCTTCTTCCCGCGGCCGGGCGCCGGCGAAAGGGGGGCCGGATGA
Upstream 100 bases:
>100_bases CCTGCGCCCACGAGCTGCTGCGCTACGTCGGCTCCCTGCTGAGCCGATAGCCACAGGGGCGACCCCGCGCACGCAACATG CCGCAGAGGAGGCGCGAGCG
Downstream 100 bases:
>100_bases CGTGGCCTGCGACCTGGACAGGCTGGGGGAGGCGGTTGAGGCGGTGGTCCGCCGGGCCCGGGCGGCGGGCCTGGACTTCT TCCCCCTGCGGTTCGAGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MADLPFVISREDWSLHRQGQMDQERHQARIREAIRANLADIVSDEAIIASDGRKVVRLPIRVLREYRFRLDWQKQPRVGE ADGPVRPGEPVGRPGRAAEAAGGSGAGDEAGEDWFETDVPLEELEELLFAELSLPHLEPKQEPHLTVLHHEWRDVRRQGL YANIDKKRTLLEAMKRNRLAGRPPLAGIRREDLRFRTWDEAEIPGASAVLIIMMDTSGSMGTGEKYIARSLCHWMVRFLR TRYERVKLHFVAHTTEAKEMDEESFFTRGESGGTRCSSAYEYALQLIDRRYPPDRHNLYAFHFSDGDNLISDNPRAVALL RKLLERCALVGYGQIETQPQYLSMPYYQPNTLLTLFREEIDHPRFVTALIRDRSEIYAALRAFFPRPGAGERGAG
Sequences:
>Translated_395_residues MADLPFVISREDWSLHRQGQMDQERHQARIREAIRANLADIVSDEAIIASDGRKVVRLPIRVLREYRFRLDWQKQPRVGE ADGPVRPGEPVGRPGRAAEAAGGSGAGDEAGEDWFETDVPLEELEELLFAELSLPHLEPKQEPHLTVLHHEWRDVRRQGL YANIDKKRTLLEAMKRNRLAGRPPLAGIRREDLRFRTWDEAEIPGASAVLIIMMDTSGSMGTGEKYIARSLCHWMVRFLR TRYERVKLHFVAHTTEAKEMDEESFFTRGESGGTRCSSAYEYALQLIDRRYPPDRHNLYAFHFSDGDNLISDNPRAVALL RKLLERCALVGYGQIETQPQYLSMPYYQPNTLLTLFREEIDHPRFVTALIRDRSEIYAALRAFFPRPGAGERGAG >Mature_394_residues ADLPFVISREDWSLHRQGQMDQERHQARIREAIRANLADIVSDEAIIASDGRKVVRLPIRVLREYRFRLDWQKQPRVGEA DGPVRPGEPVGRPGRAAEAAGGSGAGDEAGEDWFETDVPLEELEELLFAELSLPHLEPKQEPHLTVLHHEWRDVRRQGLY ANIDKKRTLLEAMKRNRLAGRPPLAGIRREDLRFRTWDEAEIPGASAVLIIMMDTSGSMGTGEKYIARSLCHWMVRFLRT RYERVKLHFVAHTTEAKEMDEESFFTRGESGGTRCSSAYEYALQLIDRRYPPDRHNLYAFHFSDGDNLISDNPRAVALLR KLLERCALVGYGQIETQPQYLSMPYYQPNTLLTLFREEIDHPRFVTALIRDRSEIYAALRAFFPRPGAGERGAG
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=431, Percent_Identity=25.5220417633411, Blast_Score=120, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014230 - InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 45290; Mature: 45159
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLPFVISREDWSLHRQGQMDQERHQARIREAIRANLADIVSDEAIIASDGRKVVRLPI CCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH RVLREYRFRLDWQKQPRVGEADGPVRPGEPVGRPGRAAEAAGGSGAGDEAGEDWFETDVP HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHCCCCC LEELEELLFAELSLPHLEPKQEPHLTVLHHEWRDVRRQGLYANIDKKRTLLEAMKRNRLA HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCC GRPPLAGIRREDLRFRTWDEAEIPGASAVLIIMMDTSGSMGTGEKYIARSLCHWMVRFLR CCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH TRYERVKLHFVAHTTEAKEMDEESFFTRGESGGTRCSSAYEYALQLIDRRYPPDRHNLYA HHHHHEEEEEEEECCHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE FHFSDGDNLISDNPRAVALLRKLLERCALVGYGQIETQPQYLSMPYYQPNTLLTLFREEI EEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHC DHPRFVTALIRDRSEIYAALRAFFPRPGAGERGAG CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure ADLPFVISREDWSLHRQGQMDQERHQARIREAIRANLADIVSDEAIIASDGRKVVRLPI CCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH RVLREYRFRLDWQKQPRVGEADGPVRPGEPVGRPGRAAEAAGGSGAGDEAGEDWFETDVP HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHCCCCC LEELEELLFAELSLPHLEPKQEPHLTVLHHEWRDVRRQGLYANIDKKRTLLEAMKRNRLA HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCC GRPPLAGIRREDLRFRTWDEAEIPGASAVLIIMMDTSGSMGTGEKYIARSLCHWMVRFLR CCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH TRYERVKLHFVAHTTEAKEMDEESFFTRGESGGTRCSSAYEYALQLIDRRYPPDRHNLYA HHHHHEEEEEEEECCHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE FHFSDGDNLISDNPRAVALLRKLLERCALVGYGQIETQPQYLSMPYYQPNTLLTLFREEI EEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHC DHPRFVTALIRDRSEIYAALRAFFPRPGAGERGAG CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA