Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51892295

Identifier: 51892295

GI number: 51892295

Start: 1287614

End: 1288684

Strand: Reverse

Name: 51892295

Synonym: STH1157

Alternate gene names: NA

Gene position: 1288684-1287614 (Counterclockwise)

Preceding gene: 51892296

Following gene: 51892294

Centisome position: 36.14

GC content: 67.41

Gene sequence:

>1071_bases
ATGAACCTACGTCAGCGGGCGGCCGTAGCGCTCCTCTCCCTGTGCGCCCTGGTCCTCAGCGCCTGTGGCGGCTCCCAGCA
GCCTCCCAGCAACCAGCCCCCGTCGGGCGGCGGGCAGCAGCAACAGCAGCAGGAGCCGCAGGGGTCGGCGGAGCCCAAGG
AGATCGTGGTCTACACCTCGCACCAGGCCGACATCCACGAACCGCTGTTCAAGGCTTTCGAAGAGGCCACCGGCATCAAG
GTGACCCCGGTCTACGCGGCCACGGGCGAGCTCTTCCAGCGGATGCGGGCGGAGGCCAACAACCCGCTGGGCGACGTGAT
CTTCGGCGGCGGCGCGGAGACCCACGAGGCCAACAAGGACCTCCTGCAGCCCTACGTGCCCAAGGAGATCGACAAGCTGG
CGCCGGGCACCGTGGCCAAGGACAACAGCTGGACGGGCTTCACCGCCCTGCCCATCGTGATCATGTACAACACCAACCTG
CTGACGGCCGACGAGGCGCCCAAGAGCTTCGCCGACCTGACCGACCCCAAGTGGGCGGGCAAGATCGCCATGCCTGACGC
GGCCAAGTCCGGCTCCGCCTACACCACCGTGGTGACGATCCTGCACGCGATGGGCCGGGACGACGGCAAGGGCTGGGAGG
TCATGAAGCAGATCGCGGCCAACGCCAAGATCCTGGCCTCGTCCTCCCAGGGCCCGAAGGGCACGAATGACGGCGAGTAC
GCCGTGTCCCTGACCCACGAGGAGGCGGCGTTCAAGTACGTCGCGGCGGGCGGCCCCGTGGGGATCGTCTACCCCGCAGA
GGGCACCTCCAACGTGCCTGATGCCGTCGCGATCATCAAGGCTGCGAAGCACCCGGAGAACGCCAAGGCGTTCATCGACT
TCATGGTCTCGCAGCAGATGCAGGAGTACGTGGCCAAGGAGCTGAACCGGCGTCCGGTGCGCACGGACGTCGCCCCGCCG
GAGGGCCTGGAGGACGTGTCGAAGATCAAGTTCCTGGACTACGACATGGACTGGGCGGCGAACCAGCGCGAGGCCGTCCT
CGACCAGTGGAAGGACATCGTGGTCCAGTAG

Upstream 100 bases:

>100_bases
AGCCTCGCGGGGATAGGTATAATAATTGCGGTGCGTATTGGCGCGGCTAGTTTGCATTTCAGTTGATCCTGAATCCGTGC
GCAAGACAGGAGGTAGTCCC

Downstream 100 bases:

>100_bases
CCGGCGGCCCTGATGGGGTGCTCCCTTGACGGGAGCACCCCACTGTCCTCATTGGGATGCGAACTTGTCAACGTGGAGGT
CGGATGAATGTCGAAGGTCA

Product: iron ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTSHQADIHEPLFKAFEEATGIK
VTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKDLLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNL
LTADEAPKSFADLTDPKWAGKIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY
AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQMQEYVAKELNRRPVRTDVAPP
EGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ

Sequences:

>Translated_356_residues
MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTSHQADIHEPLFKAFEEATGIK
VTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKDLLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNL
LTADEAPKSFADLTDPKWAGKIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY
AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQMQEYVAKELNRRPVRTDVAPP
EGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ
>Mature_356_residues
MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTSHQADIHEPLFKAFEEATGIK
VTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKDLLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNL
LTADEAPKSFADLTDPKWAGKIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY
AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQMQEYVAKELNRRPVRTDVAPP
EGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 38293; Mature: 38293

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEC
HQADIHEPLFKAFEEATGIKVTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKD
CCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHH
LLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNLLTADEAPKSFADLTDPKWAG
HHCCCCCHHHHHCCCCCCCCCCCCCCHHHEEEEEEECCCEEECCCCCHHHHHCCCCCCCC
KIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY
CEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCE
AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQM
EEEEECHHHHEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
QEYVAKELNRRPVRTDVAPPEGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLRQRAAVALLSLCALVLSACGGSQQPPSNQPPSGGGQQQQQQEPQGSAEPKEIVVYTS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEC
HQADIHEPLFKAFEEATGIKVTPVYAATGELFQRMRAEANNPLGDVIFGGGAETHEANKD
CCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHH
LLQPYVPKEIDKLAPGTVAKDNSWTGFTALPIVIMYNTNLLTADEAPKSFADLTDPKWAG
HHCCCCCHHHHHCCCCCCCCCCCCCCHHHEEEEEEECCCEEECCCCCHHHHHCCCCCCCC
KIAMPDAAKSGSAYTTVVTILHAMGRDDGKGWEVMKQIAANAKILASSSQGPKGTNDGEY
CEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCE
AVSLTHEEAAFKYVAAGGPVGIVYPAEGTSNVPDAVAIIKAAKHPENAKAFIDFMVSQQM
EEEEECHHHHEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
QEYVAKELNRRPVRTDVAPPEGLEDVSKIKFLDYDMDWAANQREAVLDQWKDIVVQ
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]