| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892267
Identifier: 51892267
GI number: 51892267
Start: 1261221
End: 1262444
Strand: Reverse
Name: 51892267
Synonym: STH1129
Alternate gene names: NA
Gene position: 1262444-1261221 (Counterclockwise)
Preceding gene: 51892279
Following gene: 51892259
Centisome position: 35.4
GC content: 62.25
Gene sequence:
>1224_bases GTGACCACCTTTAGGATCGCATTGGAGGAGCTTCTGCGCAAGACCGGTGTGGATGACTTCGACTTCCTTCGGGAAGGGCT GCGAGTCCTCGCCCAGGGCCTCATGGAGCTGGAGGTGTCCCAACGGATCGGCGCGGACCGATACGAGCGATCGGCCGAGC GCAGCACTTACCGTAACGGCTATCGTGAGCGGCAGTGGGATACGCGGGTTGGGACGATTGACTTGCAGATCCCCAAGCTG CGAAAGGGATCTTACATGCCCAGTTTCCTGGAACCTCGCCGGCGGGCCGAAAAGGCTCTCGTGGCGGTGGTTCTGGAGGC CTACGTGAACGGGGTGAGTACGCGCAAGGTAGATGACCTGGTACAAGCCTTGGGCATGACAGGTGTGAGCAAGAGCCAGG TCTCGCGGCTATGCGCTGAGTTGGATGAGGTGGTTCAGGCTTTCCGGAATCGACCGTTGGAGAGCCGTTACCCTTACGTC TGGCTGGATGCGAAGTACGTCAAGGTACGGGAGAACGGCAGGGTCTGCACGATGGCACTGGTCGTGGCTGTGGGGGTACG GGAGGACGGCGACCGGGAGGTCCTGGGACTGGACGTCGGGCCCAGCGAAGACGGGGCCTTCTGGACGGCATTTCTGCGCC AACTGGTTACACGCGGTCTCAAGGGCGTCCTTCTGGCCATCAGTGACAGCCACGTGGGTCTGCAGGAGGCCATCCGGACC GTACTCAGCGGCGCCAGTTGGCAGCGGTCCCGGGTGCACTTCATGCGCAACCTGCTCGGTTACGTGCCCAAGCATTGGCA ATCCATGGTCGCAGCCGCAGTCAGGACGATCTTCGCACAGCCTGACCAGCAAGCGGCGCGGCGTCAACTGGCCGTTGTCG CGGACAATCTGCGACCGCAGTTTCCCCGTGCTGCTCAGCTGCTCGAAGAAGCCGAAGACGACATCCTTGCCTACATGGCC TTTCCGACTGAGCACTGGCGACAGCTGCACTCCACCAACCCGCTGGAACGGTTGAACCGGGAGATCGGCCGTCGGACGGA TGTGGTCGGCATCTTCCCCAATCGGGAGGCCTTCATCCGCCTGGCCGGCGCCGTCCTGATCGAACAGCAGGATGAGTGGA CGGCAGCCCCGCGGCGGTATTTCAGTCAGGCGTCCATGGCCAAGCTGTACACCAGCAACCAAAGTGTTAGCGGTACCGAC TTCCTGGCACTGAGTGCTGACTAG
Upstream 100 bases:
>100_bases GTTTGGCAGCAGGTAGTAGAGTGTTTCCGCGAAGTGCTGGTTGAGGCGCTCTCGCGGGTGGACACTTTGCTGTATGACAT CGCAAGGGAGGAACCCGCAG
Downstream 100 bases:
>100_bases TTCAAGTTTCACGCGAATAACTCGACATCGGTGGTGTTGAAAAGGTGCATGGGTAAGAAGCGGCCAAGTTCAGGGTAATC TGAGCTCCAGCCAGGGGAGT
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKL RKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYV WLDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMA FPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTD FLALSAD
Sequences:
>Translated_407_residues MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKL RKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYV WLDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMA FPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTD FLALSAD >Mature_406_residues TTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKLR KGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYVW LDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRTV LSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMAF PTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTDF LALSAD
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 46135; Mature: 46004
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNG CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC YRERQWDTRVGTIDLQIPKLRKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDL CHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYVWLDAKYVKVRENGRVCTMAL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEEEEECCCCCHHHHH VVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQ HHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC FPRAAQLLEEAEDDILAYMAFPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIR CHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCHHHHHH LAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTDFLALSAD HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC >Mature Secondary Structure TTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC YRERQWDTRVGTIDLQIPKLRKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDL CHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYVWLDAKYVKVRENGRVCTMAL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEEEEECCCCCHHHHH VVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQ HHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC FPRAAQLLEEAEDDILAYMAFPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIR CHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCHHHHHH LAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTDFLALSAD HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1663885; 12788972 [H]