Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51892267

Identifier: 51892267

GI number: 51892267

Start: 1261221

End: 1262444

Strand: Reverse

Name: 51892267

Synonym: STH1129

Alternate gene names: NA

Gene position: 1262444-1261221 (Counterclockwise)

Preceding gene: 51892279

Following gene: 51892259

Centisome position: 35.4

GC content: 62.25

Gene sequence:

>1224_bases
GTGACCACCTTTAGGATCGCATTGGAGGAGCTTCTGCGCAAGACCGGTGTGGATGACTTCGACTTCCTTCGGGAAGGGCT
GCGAGTCCTCGCCCAGGGCCTCATGGAGCTGGAGGTGTCCCAACGGATCGGCGCGGACCGATACGAGCGATCGGCCGAGC
GCAGCACTTACCGTAACGGCTATCGTGAGCGGCAGTGGGATACGCGGGTTGGGACGATTGACTTGCAGATCCCCAAGCTG
CGAAAGGGATCTTACATGCCCAGTTTCCTGGAACCTCGCCGGCGGGCCGAAAAGGCTCTCGTGGCGGTGGTTCTGGAGGC
CTACGTGAACGGGGTGAGTACGCGCAAGGTAGATGACCTGGTACAAGCCTTGGGCATGACAGGTGTGAGCAAGAGCCAGG
TCTCGCGGCTATGCGCTGAGTTGGATGAGGTGGTTCAGGCTTTCCGGAATCGACCGTTGGAGAGCCGTTACCCTTACGTC
TGGCTGGATGCGAAGTACGTCAAGGTACGGGAGAACGGCAGGGTCTGCACGATGGCACTGGTCGTGGCTGTGGGGGTACG
GGAGGACGGCGACCGGGAGGTCCTGGGACTGGACGTCGGGCCCAGCGAAGACGGGGCCTTCTGGACGGCATTTCTGCGCC
AACTGGTTACACGCGGTCTCAAGGGCGTCCTTCTGGCCATCAGTGACAGCCACGTGGGTCTGCAGGAGGCCATCCGGACC
GTACTCAGCGGCGCCAGTTGGCAGCGGTCCCGGGTGCACTTCATGCGCAACCTGCTCGGTTACGTGCCCAAGCATTGGCA
ATCCATGGTCGCAGCCGCAGTCAGGACGATCTTCGCACAGCCTGACCAGCAAGCGGCGCGGCGTCAACTGGCCGTTGTCG
CGGACAATCTGCGACCGCAGTTTCCCCGTGCTGCTCAGCTGCTCGAAGAAGCCGAAGACGACATCCTTGCCTACATGGCC
TTTCCGACTGAGCACTGGCGACAGCTGCACTCCACCAACCCGCTGGAACGGTTGAACCGGGAGATCGGCCGTCGGACGGA
TGTGGTCGGCATCTTCCCCAATCGGGAGGCCTTCATCCGCCTGGCCGGCGCCGTCCTGATCGAACAGCAGGATGAGTGGA
CGGCAGCCCCGCGGCGGTATTTCAGTCAGGCGTCCATGGCCAAGCTGTACACCAGCAACCAAAGTGTTAGCGGTACCGAC
TTCCTGGCACTGAGTGCTGACTAG

Upstream 100 bases:

>100_bases
GTTTGGCAGCAGGTAGTAGAGTGTTTCCGCGAAGTGCTGGTTGAGGCGCTCTCGCGGGTGGACACTTTGCTGTATGACAT
CGCAAGGGAGGAACCCGCAG

Downstream 100 bases:

>100_bases
TTCAAGTTTCACGCGAATAACTCGACATCGGTGGTGTTGAAAAGGTGCATGGGTAAGAAGCGGCCAAGTTCAGGGTAATC
TGAGCTCCAGCCAGGGGAGT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKL
RKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYV
WLDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT
VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMA
FPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTD
FLALSAD

Sequences:

>Translated_407_residues
MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKL
RKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYV
WLDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT
VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMA
FPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTD
FLALSAD
>Mature_406_residues
TTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKLR
KGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYVW
LDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRTV
LSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMAF
PTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTDF
LALSAD

Specific function: Required for the transposition of the insertion element [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase mutator family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001207 [H]

Pfam domain/function: PF00872 Transposase_mut [H]

EC number: NA

Molecular weight: Translated: 46135; Mature: 46004

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNG
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
YRERQWDTRVGTIDLQIPKLRKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDL
CHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYVWLDAKYVKVRENGRVCTMAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEEEEECCCCCHHHHH
VVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT
HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQ
HHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
FPRAAQLLEEAEDDILAYMAFPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIR
CHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCHHHHHH
LAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTDFLALSAD
HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNG
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
YRERQWDTRVGTIDLQIPKLRKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDL
CHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYVWLDAKYVKVRENGRVCTMAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEEEEECCCCCHHHHH
VVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT
HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQ
HHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
FPRAAQLLEEAEDDILAYMAFPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIR
CHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCHHHHHH
LAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTDFLALSAD
HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1663885; 12788972 [H]