| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51892215
Identifier: 51892215
GI number: 51892215
Start: 1191346
End: 1192347
Strand: Reverse
Name: 51892215
Synonym: STH1077
Alternate gene names: NA
Gene position: 1192347-1191346 (Counterclockwise)
Preceding gene: 51892225
Following gene: 51892209
Centisome position: 33.44
GC content: 70.26
Gene sequence:
>1002_bases GTGCGGATCAGGACCATCGCAACGGGGCTGCTCCTGGCGGCTGCCCTGGTCGGTTGCAGCCTCGGGCCGGACCGCCCCTT GACCGAACTTCCGGAGGGGGCGGAGTTTGCTCCGGCGGGCGCCGTGTCGGGCTTCGCAATCCGGGGGGAGTTGCACCTCT ACCCGCACCACGAACTGGTGGGCGGCGGGCTGGCCTCCTTCATCGTGCACGTGGAGTCTCTGTCTGACGAAGGCGTGCGA GGCCTGCGCATGGCCGTTTTCTACCCCGAAGAGATCGCCCTGGTGAGCGACGTCGAGCCCTACCTGGAGTCGCCGCGCGG CTACGATCTCACCCCGGACCAACCGTCCTACGGCCTGGGGCGGACCTTCACGTTCCCCGACTGGGGCCAGGCGCACGTCG TACGGCAACTGGCCGAGAAGCCGCTCAGGGTGCACCTGGTCTGGGACGGCGGCGAGCAGTTCCTGGAGGTGCCGCCCGAA GCCATTCGCGTGACGCAGAGCGATGAGCCCCGCCGGTTGGCCAACGACCCGGATCTGTTCAGTTTCCCCACCCACCCCGC CTTCCTGGATCACCCGCCGTTCTCGGAAGGCCGCTACCTGTCGCGGGCCAGGGACGTGACCGCGGCCGACCTGCTGGCGT GGTACCGGGCCGAGATGCCGGCCAGTGGATGGGAGGCCCTGCCCGCCCCTGACCGGGCGCTGCTCTTCCGGAAAGGGGAG ATGTTCCTCAGCCTCGCCGCGGCCGATGAACCCGACGGGACGACGGTCATGTGGTCTCACCTGCGCGGTACCGCCGAGGT GCCCGAGGACGCGGCCGTCCGGATCGTCCGGGCCAGGTACCCCGAGAGCCGGGAGAACCAGTGGGTGGCGACATACCTCG CCGACGGCGCGGGTTCGGGGGCGGATTCCCCCGTGTGGGAGGTCCGGGGCCTGCGGGATGGCAAGGTCTGGGTCACTGCC TGGGTGGATGCCGTGACCGCCGAACTGCGGGTCGCGGAGTAG
Upstream 100 bases:
>100_bases GAAAAAGCACCGTCTCCTACCTGCCGGCCCCCCAAACGCGGAACCTTGATGCGTGCAGACCGTGTAATGCATAAGTCTTT TCAACGCGCAGGTGATGACC
Downstream 100 bases:
>100_bases CCGCGAAGACTGCCCCGCCGCTGCGGCGGGGCAGTTTCTTTGGCGCGGGTTCACAGCTTGACCTTGTTCCCCTCCCAGTA CTTCAGCAGCGGGTAGGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MRIRTIATGLLLAAALVGCSLGPDRPLTELPEGAEFAPAGAVSGFAIRGELHLYPHHELVGGGLASFIVHVESLSDEGVR GLRMAVFYPEEIALVSDVEPYLESPRGYDLTPDQPSYGLGRTFTFPDWGQAHVVRQLAEKPLRVHLVWDGGEQFLEVPPE AIRVTQSDEPRRLANDPDLFSFPTHPAFLDHPPFSEGRYLSRARDVTAADLLAWYRAEMPASGWEALPAPDRALLFRKGE MFLSLAAADEPDGTTVMWSHLRGTAEVPEDAAVRIVRARYPESRENQWVATYLADGAGSGADSPVWEVRGLRDGKVWVTA WVDAVTAELRVAE
Sequences:
>Translated_333_residues MRIRTIATGLLLAAALVGCSLGPDRPLTELPEGAEFAPAGAVSGFAIRGELHLYPHHELVGGGLASFIVHVESLSDEGVR GLRMAVFYPEEIALVSDVEPYLESPRGYDLTPDQPSYGLGRTFTFPDWGQAHVVRQLAEKPLRVHLVWDGGEQFLEVPPE AIRVTQSDEPRRLANDPDLFSFPTHPAFLDHPPFSEGRYLSRARDVTAADLLAWYRAEMPASGWEALPAPDRALLFRKGE MFLSLAAADEPDGTTVMWSHLRGTAEVPEDAAVRIVRARYPESRENQWVATYLADGAGSGADSPVWEVRGLRDGKVWVTA WVDAVTAELRVAE >Mature_333_residues MRIRTIATGLLLAAALVGCSLGPDRPLTELPEGAEFAPAGAVSGFAIRGELHLYPHHELVGGGLASFIVHVESLSDEGVR GLRMAVFYPEEIALVSDVEPYLESPRGYDLTPDQPSYGLGRTFTFPDWGQAHVVRQLAEKPLRVHLVWDGGEQFLEVPPE AIRVTQSDEPRRLANDPDLFSFPTHPAFLDHPPFSEGRYLSRARDVTAADLLAWYRAEMPASGWEALPAPDRALLFRKGE MFLSLAAADEPDGTTVMWSHLRGTAEVPEDAAVRIVRARYPESRENQWVATYLADGAGSGADSPVWEVRGLRDGKVWVTA WVDAVTAELRVAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36560; Mature: 36560
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIRTIATGLLLAAALVGCSLGPDRPLTELPEGAEFAPAGAVSGFAIRGELHLYPHHELV CEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEEECCCHHHH GGGLASFIVHVESLSDEGVRGLRMAVFYPEEIALVSDVEPYLESPRGYDLTPDQPSYGLG HCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEHHCCHHHHCCCCCCCCCCCCCCCCCC RTFTFPDWGQAHVVRQLAEKPLRVHLVWDGGEQFLEVPPEAIRVTQSDEPRRLANDPDLF CEECCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHCCHHHEEECCCCCCHHHCCCCCCC SFPTHPAFLDHPPFSEGRYLSRARDVTAADLLAWYRAEMPASGWEALPAPDRALLFRKGE CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC MFLSLAAADEPDGTTVMWSHLRGTAEVPEDAAVRIVRARYPESRENQWVATYLADGAGSG EEEEEEECCCCCCCEEEEECCCCCCCCCCHHHEEEEECCCCCCCCCCEEEEEEECCCCCC ADSPVWEVRGLRDGKVWVTAWVDAVTAELRVAE CCCCCEEECCCCCCCEEEEEEHHHHHHEEEECC >Mature Secondary Structure MRIRTIATGLLLAAALVGCSLGPDRPLTELPEGAEFAPAGAVSGFAIRGELHLYPHHELV CEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEEECCCHHHH GGGLASFIVHVESLSDEGVRGLRMAVFYPEEIALVSDVEPYLESPRGYDLTPDQPSYGLG HCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEHHCCHHHHCCCCCCCCCCCCCCCCCC RTFTFPDWGQAHVVRQLAEKPLRVHLVWDGGEQFLEVPPEAIRVTQSDEPRRLANDPDLF CEECCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHCCHHHEEECCCCCCHHHCCCCCCC SFPTHPAFLDHPPFSEGRYLSRARDVTAADLLAWYRAEMPASGWEALPAPDRALLFRKGE CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC MFLSLAAADEPDGTTVMWSHLRGTAEVPEDAAVRIVRARYPESRENQWVATYLADGAGSG EEEEEEECCCCCCCEEEEECCCCCCCCCCHHHEEEEECCCCCCCCCCEEEEEEECCCCCC ADSPVWEVRGLRDGKVWVTAWVDAVTAELRVAE CCCCCEEECCCCCCCEEEEEEHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA