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The map label for this gene is appB [H]

Identifier: 51892175

GI number: 51892175

Start: 1154362

End: 1155309

Strand: Reverse

Name: appB [H]

Synonym: STH1037

Alternate gene names: 51892175

Gene position: 1155309-1154362 (Counterclockwise)

Preceding gene: 51892176

Following gene: 51892174

Centisome position: 32.4

GC content: 64.45

Gene sequence:

>948_bases
GTGGGCCGGTACCTCGTGCGACGCCTGTTGCAGATGATCCCGATTCTCTTCGGCGTCAGCATCATCGTCTTCGTCATCAT
CCACAGCGCCCCGGGCGACCCGTACGCCTACCTCTTCGGCCCGCGGATCGACCCCACGCTCCGGGCCCGGCTCATGGAGG
AGATGGGGTTCAACGACCCCATCCCGATCCAGTACGTCCGCTGGCTCACCACCACGCTGAAAGGCAACCTGGGGTACTCG
GTCCGCACTCAGGAACCGGTGGTCGACATGCTGGCCCGGGCGATCCCGCGCACCCTGCTGCTCACGGGCACGGCCTTCCT
GCTCGGCCTGGCCCTGGCCATCCCCATCGGGGTCATCTCCGCTACACGCCAGTACTCGCTGATCGACTACGCGGCGACGA
CGTTCGCCTTCATGGGCATCTCCCTGCCCTCCTTCTTCGCCGCCCTCCTGGCGATCTACTTCTTCGCGGTGAGACTTCCG
ATCTTCCCGATGAACGGCATCATTACCCCGGGCGGAGGCGGCTTCTGGGACGTGCTCCACCACCTCGTGCTGCCCGCCGT
GACCCTGGGGCTGCGTGATATGGCCTCATACGCCCGCTTCACCCGCTCTGCCATGCTGGAGGTGCTGCGTCAGGACTACG
TGCGGACTGCGCGCGCCAAAGGGCTGGCCGAACGGGTGGTGGTGTACAAACATGCTTTCCGCAACGGGATGATCCCCGTG
ATCACCCTCTTCGGGTTCAGCCTGCCCGGACTCTTCGGCGGGGCCGTCATCATCGAACAGGTCTTCACGTTCCCGGGGAT
GGGGCTGCTGACGTTTGAGGCGGTCAACAACCGCGACTACTCTGTGCTCATGGCCACCAACATGTTCTTCGCCCTGCTGG
TCATCCTGGGTAACCTCATCGCCGACATCCTCTATGCCGTCGCTGACCCCCGCATCCGGTATGCGTAA

Upstream 100 bases:

>100_bases
CTGTGGCTCTCCCGGTGATCCTCTGACCATCCACCGGCTGGCGGCCCGGGGGGAACGCACCCCCGGGCCGCGCACCGCCG
GGAAGAAAGGAGACTGACAG

Downstream 100 bases:

>100_bases
GGAGGTACAGCCGTGGCGATCTCCCGTCCTACACCGGACCCGATTCCGACCCAGTTCGACGGCCTGACGGCGCAGGAGAC
CTCGTACGCCCGGCTGGTGC

Product: oligopeptide ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGRYLVRRLLQMIPILFGVSIIVFVIIHSAPGDPYAYLFGPRIDPTLRARLMEEMGFNDPIPIQYVRWLTTTLKGNLGYS
VRTQEPVVDMLARAIPRTLLLTGTAFLLGLALAIPIGVISATRQYSLIDYAATTFAFMGISLPSFFAALLAIYFFAVRLP
IFPMNGIITPGGGGFWDVLHHLVLPAVTLGLRDMASYARFTRSAMLEVLRQDYVRTARAKGLAERVVVYKHAFRNGMIPV
ITLFGFSLPGLFGGAVIIEQVFTFPGMGLLTFEAVNNRDYSVLMATNMFFALLVILGNLIADILYAVADPRIRYA

Sequences:

>Translated_315_residues
MGRYLVRRLLQMIPILFGVSIIVFVIIHSAPGDPYAYLFGPRIDPTLRARLMEEMGFNDPIPIQYVRWLTTTLKGNLGYS
VRTQEPVVDMLARAIPRTLLLTGTAFLLGLALAIPIGVISATRQYSLIDYAATTFAFMGISLPSFFAALLAIYFFAVRLP
IFPMNGIITPGGGGFWDVLHHLVLPAVTLGLRDMASYARFTRSAMLEVLRQDYVRTARAKGLAERVVVYKHAFRNGMIPV
ITLFGFSLPGLFGGAVIIEQVFTFPGMGLLTFEAVNNRDYSVLMATNMFFALLVILGNLIADILYAVADPRIRYA
>Mature_314_residues
GRYLVRRLLQMIPILFGVSIIVFVIIHSAPGDPYAYLFGPRIDPTLRARLMEEMGFNDPIPIQYVRWLTTTLKGNLGYSV
RTQEPVVDMLARAIPRTLLLTGTAFLLGLALAIPIGVISATRQYSLIDYAATTFAFMGISLPSFFAALLAIYFFAVRLPI
FPMNGIITPGGGGFWDVLHHLVLPAVTLGLRDMASYARFTRSAMLEVLRQDYVRTARAKGLAERVVVYKHAFRNGMIPVI
TLFGFSLPGLFGGAVIIEQVFTFPGMGLLTFEAVNNRDYSVLMATNMFFALLVILGNLIADILYAVADPRIRYA

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=38.5350318471338, Blast_Score=227, Evalue=7e-61,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=34.7181008902077, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=36.7088607594937, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=35.4430379746835, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=34.7560975609756, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=30.1939058171745, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=28.7313432835821, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34911; Mature: 34780

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRYLVRRLLQMIPILFGVSIIVFVIIHSAPGDPYAYLFGPRIDPTLRARLMEEMGFNDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
IPIQYVRWLTTTLKGNLGYSVRTQEPVVDMLARAIPRTLLLTGTAFLLGLALAIPIGVIS
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATRQYSLIDYAATTFAFMGISLPSFFAALLAIYFFAVRLPIFPMNGIITPGGGGFWDVLH
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
HLVLPAVTLGLRDMASYARFTRSAMLEVLRQDYVRTARAKGLAERVVVYKHAFRNGMIPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ITLFGFSLPGLFGGAVIIEQVFTFPGMGLLTFEAVNNRDYSVLMATNMFFALLVILGNLI
HHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHH
ADILYAVADPRIRYA
HHHHHHHCCCCCCCC
>Mature Secondary Structure 
GRYLVRRLLQMIPILFGVSIIVFVIIHSAPGDPYAYLFGPRIDPTLRARLMEEMGFNDP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
IPIQYVRWLTTTLKGNLGYSVRTQEPVVDMLARAIPRTLLLTGTAFLLGLALAIPIGVIS
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATRQYSLIDYAATTFAFMGISLPSFFAALLAIYFFAVRLPIFPMNGIITPGGGGFWDVLH
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
HLVLPAVTLGLRDMASYARFTRSAMLEVLRQDYVRTARAKGLAERVVVYKHAFRNGMIPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ITLFGFSLPGLFGGAVIIEQVFTFPGMGLLTFEAVNNRDYSVLMATNMFFALLVILGNLI
HHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHH
ADILYAVADPRIRYA
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]