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The map label for this gene is rbpB [H]

Identifier: 51892147

GI number: 51892147

Start: 1126177

End: 1126437

Strand: Reverse

Name: rbpB [H]

Synonym: STH1009

Alternate gene names: 51892147

Gene position: 1126437-1126177 (Counterclockwise)

Preceding gene: 51892148

Following gene: 51892144

Centisome position: 31.59

GC content: 67.05

Gene sequence:

>261_bases
TTGGCCGTTGTGAGCATTTTCGTCGGGAATCTGCCCTGGGCTACCACGGATGAGGAACTGGAGGCGCTCTTCGCCCCGTA
CGGGGAAGTGAAGCGGTCGAAGATCGTCCTGGACCGGGAGACCCGCCGCAGCCGCGGGTTCGGGTTCGTGGACATGGAAG
AGGAGGCGGCCGCCGGGGCCATCGAGGCCCTGAACGGCCAGCCGTACAACGGCCGTGTTCTGACCGTCAACCTGGCCCAG
AGCCGCCCGGCTCGCGCGTAA

Upstream 100 bases:

>100_bases
CGCAGCCCGGCAGCAAATTTCGCCGAAGCGGCAGGTTTCTCGGTCGCAAGGGCGAAGAGGTATGCCGGGTCCGTGACTCT
CACTTAGGAGGCTGTCAGAC

Downstream 100 bases:

>100_bases
CGTCCGGCGCCAATCGCACGGCGGCGCCCCCGGCACATGCGGGGGCGCCGCTTTTGTGTGTGATCCGACTTCCTAGCCCT
AGAGGCGTTCCTCGATCTCG

Product: glycine-rich RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MAVVSIFVGNLPWATTDEELEALFAPYGEVKRSKIVLDRETRRSRGFGFVDMEEEAAAGAIEALNGQPYNGRVLTVNLAQ
SRPARA

Sequences:

>Translated_86_residues
MAVVSIFVGNLPWATTDEELEALFAPYGEVKRSKIVLDRETRRSRGFGFVDMEEEAAAGAIEALNGQPYNGRVLTVNLAQ
SRPARA
>Mature_85_residues
AVVSIFVGNLPWATTDEELEALFAPYGEVKRSKIVLDRETRRSRGFGFVDMEEEAAAGAIEALNGQPYNGRVLTVNLAQS
RPARA

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=44, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4557493, Length=78, Percent_Identity=41.025641025641, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI14149675, Length=78, Percent_Identity=41.025641025641, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI221139802, Length=76, Percent_Identity=42.1052631578947, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=83, Percent_Identity=50.6024096385542, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17508585, Length=80, Percent_Identity=47.5, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=51.9480519480519, Blast_Score=77, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321599, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=40.2439024390244, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9426; Mature: 9295

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVSIFVGNLPWATTDEELEALFAPYGEVKRSKIVLDRETRRSRGFGFVDMEEEAAAGA
CEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCH
IEALNGQPYNGRVLTVNLAQSRPARA
HHHCCCCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
AVVSIFVGNLPWATTDEELEALFAPYGEVKRSKIVLDRETRRSRGFGFVDMEEEAAAGA
EEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCH
IEALNGQPYNGRVLTVNLAQSRPARA
HHHCCCCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]