| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is livJ [C]
Identifier: 51891941
GI number: 51891941
Start: 899898
End: 901184
Strand: Reverse
Name: livJ [C]
Synonym: STH803
Alternate gene names: 51891941
Gene position: 901184-899898 (Counterclockwise)
Preceding gene: 51891942
Following gene: 51891940
Centisome position: 25.27
GC content: 67.37
Gene sequence:
>1287_bases GTGAGACGTTGGTTCACTGCGATCCTCGCCTGCGCGCTTTCCCTGGCCCTGATCGCCGGGTGCTCGGCGCCGCCCGAGGC GGAGTCGCCGGGGCAGACCTCCGGCCCGTCCTCCAGCCAGCCGGCCGGGCAGACGGGCGGACAGTCCGGGGAGACCCAGC CCCGGCGTGAGGTCCAGGGCGTCACCGACACCACCGTCAAGGTCGGCGGCTTCGCCGCCCAGTCCGGCCCCGTGGCGCCG ATCGGCATCTCGGTGCGCAAGGGCTTCGAGGCCTACATCAAGCACGTCAACGACCAGGGCGGCGTCCACGGCCGGAAGAT CGAGATCGTGAACATCATCGACGACCAGTTCGACGGCTCCAAGGCCCTGACGGCCGCCAAGCAGCTGGTGGAGTCGGACA AGGTCTTCGCCCTGGCGCCCATCCTGGGCACCGCCGGCTTCATGGCCAGCTACGACTACTTCGTGGAGAAGCGGATCCCC GTCATCTACCCGATGACCGGCGTGGAACAGACGGCTCACCCGCCCCAGGAGAACATCTTCGCGGTGCAGCCCAACAACTA CGACGAGGCCAAGATCCTCACCCAGTACCTGGTGGACGAGCTGGGCCTGAAGAAGATCGCCGTGCTCTGGCAGAACAGCG ACATGGGTGAGCAGGGCCTGAAGGGCGTGAAGGACTACATCGGCGAGCTCGGGGCTGAACTGGTCTACGACGCCCCGCAC GACGCCGGCTCGGTGGACTTCACCACCCCGGTGCTCAACCTGAAGCAGAAGGGCGCCGAGGGCGTGGTGATCATGACCAC CCTGGCGGAGACCATCGGCATCGTGAAGGAGATGCACAAGCAAGGCGTCACCGCCGTGCCCATCACCTCCTACGTCAACG CCGACCCGGTGAACGTGCCGGCCCTCGCGGGCGAGGCGGCCATCGGCCTCTACGCCGGCGGCTGGGTGCCCGTGGCCGAC CCCGACGACCCCAACATCCAGAAGTTCTGGGAGATCTACGGCCGGTACAACAACGGCGAGCTGCCTGACGCCTACGGCAC CGCCGGCTTCATCGCCGCCGAGCTGCTGGTGAAGGGCCTGGAGGACGCCGGCCGCGACCTCACCTACGAGAGCTTCATCC AGGCGCTCGAGAACCTGAACGACTGGAGCGGCATCATGGCCCGGAACCTGACCTACGGCCCGGGCGAGCGGGCGGGCGTC AAGGCCTTCTACCTGAACAAGGTCATCGAGCAGGACGGCAACATCGTGATGGTGCAGGTGAACCAGGAGCCGTACCGCCT CCGGTAA
Upstream 100 bases:
>100_bases GCATCGGCGGCGGCCAGGGCATCGCCATGGTGGTCGAGCGGGCCTGACCGGTCCGCCTGCACCCTGCACGCATCTCCATC ACAGATAGGGGGAGACAGAC
Downstream 100 bases:
>100_bases ACCGAAAGCCCACACCGCGCTCCGCCGGGCCGCACCAGCCGGGTCCGCACGGGTCCTCAGGCGGCCCCGGCGGGAGCGCA CCCACCACCGCTTCCTGACA
Product: putative branched chain amino acid ABC transporter substrate-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MRRWFTAILACALSLALIAGCSAPPEAESPGQTSGPSSSQPAGQTGGQSGETQPRREVQGVTDTTVKVGGFAAQSGPVAP IGISVRKGFEAYIKHVNDQGGVHGRKIEIVNIIDDQFDGSKALTAAKQLVESDKVFALAPILGTAGFMASYDYFVEKRIP VIYPMTGVEQTAHPPQENIFAVQPNNYDEAKILTQYLVDELGLKKIAVLWQNSDMGEQGLKGVKDYIGELGAELVYDAPH DAGSVDFTTPVLNLKQKGAEGVVIMTTLAETIGIVKEMHKQGVTAVPITSYVNADPVNVPALAGEAAIGLYAGGWVPVAD PDDPNIQKFWEIYGRYNNGELPDAYGTAGFIAAELLVKGLEDAGRDLTYESFIQALENLNDWSGIMARNLTYGPGERAGV KAFYLNKVIEQDGNIVMVQVNQEPYRLR
Sequences:
>Translated_428_residues MRRWFTAILACALSLALIAGCSAPPEAESPGQTSGPSSSQPAGQTGGQSGETQPRREVQGVTDTTVKVGGFAAQSGPVAP IGISVRKGFEAYIKHVNDQGGVHGRKIEIVNIIDDQFDGSKALTAAKQLVESDKVFALAPILGTAGFMASYDYFVEKRIP VIYPMTGVEQTAHPPQENIFAVQPNNYDEAKILTQYLVDELGLKKIAVLWQNSDMGEQGLKGVKDYIGELGAELVYDAPH DAGSVDFTTPVLNLKQKGAEGVVIMTTLAETIGIVKEMHKQGVTAVPITSYVNADPVNVPALAGEAAIGLYAGGWVPVAD PDDPNIQKFWEIYGRYNNGELPDAYGTAGFIAAELLVKGLEDAGRDLTYESFIQALENLNDWSGIMARNLTYGPGERAGV KAFYLNKVIEQDGNIVMVQVNQEPYRLR >Mature_428_residues MRRWFTAILACALSLALIAGCSAPPEAESPGQTSGPSSSQPAGQTGGQSGETQPRREVQGVTDTTVKVGGFAAQSGPVAP IGISVRKGFEAYIKHVNDQGGVHGRKIEIVNIIDDQFDGSKALTAAKQLVESDKVFALAPILGTAGFMASYDYFVEKRIP VIYPMTGVEQTAHPPQENIFAVQPNNYDEAKILTQYLVDELGLKKIAVLWQNSDMGEQGLKGVKDYIGELGAELVYDAPH DAGSVDFTTPVLNLKQKGAEGVVIMTTLAETIGIVKEMHKQGVTAVPITSYVNADPVNVPALAGEAAIGLYAGGWVPVAD PDDPNIQKFWEIYGRYNNGELPDAYGTAGFIAAELLVKGLEDAGRDLTYESFIQALENLNDWSGIMARNLTYGPGERAGV KAFYLNKVIEQDGNIVMVQVNQEPYRLR
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
Organism=Escherichia coli, GI48994941, Length=248, Percent_Identity=24.5967741935484, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 45950; Mature: 45950
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRWFTAILACALSLALIAGCSAPPEAESPGQTSGPSSSQPAGQTGGQSGETQPRREVQG CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC VTDTTVKVGGFAAQSGPVAPIGISVRKGFEAYIKHVNDQGGVHGRKIEIVNIIDDQFDGS CCCCEEEECCEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCH KALTAAKQLVESDKVFALAPILGTAGFMASYDYFVEKRIPVIYPMTGVEQTAHPPQENIF HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEE AVQPNNYDEAKILTQYLVDELGLKKIAVLWQNSDMGEQGLKGVKDYIGELGAELVYDAPH EECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCC DAGSVDFTTPVLNLKQKGAEGVVIMTTLAETIGIVKEMHKQGVTAVPITSYVNADPVNVP CCCCCEECCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCCCC ALAGEAAIGLYAGGWVPVADPDDPNIQKFWEIYGRYNNGELPDAYGTAGFIAAELLVKGL CCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH EDAGRDLTYESFIQALENLNDWSGIMARNLTYGPGERAGVKAFYLNKVIEQDGNIVMVQV HHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE NQEPYRLR CCCCCCCC >Mature Secondary Structure MRRWFTAILACALSLALIAGCSAPPEAESPGQTSGPSSSQPAGQTGGQSGETQPRREVQG CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC VTDTTVKVGGFAAQSGPVAPIGISVRKGFEAYIKHVNDQGGVHGRKIEIVNIIDDQFDGS CCCCEEEECCEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCH KALTAAKQLVESDKVFALAPILGTAGFMASYDYFVEKRIPVIYPMTGVEQTAHPPQENIF HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEE AVQPNNYDEAKILTQYLVDELGLKKIAVLWQNSDMGEQGLKGVKDYIGELGAELVYDAPH EECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCC DAGSVDFTTPVLNLKQKGAEGVVIMTTLAETIGIVKEMHKQGVTAVPITSYVNADPVNVP CCCCCEECCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCCCC ALAGEAAIGLYAGGWVPVADPDDPNIQKFWEIYGRYNNGELPDAYGTAGFIAAELLVKGL CCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH EDAGRDLTYESFIQALENLNDWSGIMARNLTYGPGERAGVKAFYLNKVIEQDGNIVMVQV HHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE NQEPYRLR CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA