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The map label for this gene is ygeV [C]

Identifier: 51891839

GI number: 51891839

Start: 771303

End: 772700

Strand: Reverse

Name: ygeV [C]

Synonym: STH701

Alternate gene names: 51891839

Gene position: 772700-771303 (Counterclockwise)

Preceding gene: 51891848

Following gene: 51891827

Centisome position: 21.67

GC content: 73.25

Gene sequence:

>1398_bases
ATGATTTGTGGTTCTGCGGGAGGGATGTGCATGGCTCCGCTGGCGGAAACGGTGGTGCGCGCCCTGCTGGATGGCCTGGC
CGAAGGCGTCCTGGCGGTCGCGCCGGACGGGCGGATCCGGCTGGTGAACGGCGCCATGGCCCAGCTCCTGGGCACCCCCC
GGGCCAGGCTGCTGGACCGCCGGCCGGCCGATCTGGAGGACGGGGACAAGTGGGTGCCGCCGGTGCTGCGCCGCTGCCTG
GAGACCGGGGAGCGGCAGGCGATGGTCCTGGAGCGGGCGGGGCGCCGGCTGGCGCTGACGGCGGTGCCGCTGCCGGAGGG
CTGGGTGCTGGCCACGGCCCGGGACATCACGGAACTGGATCGGCTGGAGCGGCAGGTGGAGCGGATGACCCAGGAGCGGG
AACGGTACCGCCACGAACTGGCCGGGCTGCGCGCCGGGCAGGCGGGGCGCGCCGAGGTGGTCGGCTCGTCGCTGGCCATG
CAGCGGGTCATGGACCTGATCCGGCGGGTGGCGCCGGTCGACTCCACCATCCTCCTCCTGGGGGAGTCCGGCGTGGGCAA
GGGGGTGCTGGCGGCCGAGATCCACCGGCTGAGCCCGCGCCGCAGCGGACCCTTCGTGCGCATCGACTGCGCCGCCCTGC
CGGGGAGCCTGCTGGAGTCCGAGCTCTTCGACTACTCGCCCGGCTCCTTCACGGGGGCCCGGCGGGAGGGCAAGCCCGGG
CTCATTGAGCAGGCCCACGGCGGCACGCTGTTCATCGACGAGATCGGCGACGTGCCGCTGGAGCTGCAGGTCAAGCTGCT
GCACGTGATCCAGGAGCGGCGCATCATCCGGCTCGGGGCCGTCACCCCCACGGCGGTGGACATCCGGATCATCGCCGCGA
CGCACCGGGACCTGGAAGCGATGGTGGCCGAAGGCCGCTTCCGGGCGGACCTGTACTACCGGCTCAACGTGGTGCCCGTG
AAGATCCCGCCGCTGCGGGAGCGGCCGGAGGACATCCCGGTCCTGGCCAGGACCTTCCTGGACCGGTTCTGCGCCCGGTA
TCGGGTGGAGCGCACCCTCACCCCCGAGGCGGTGGAGCGGCTGGTGGCCTACAGCTGGCCGGGCAACGTCCGGGAGCTGG
AGAACCTGGTGGAGCGGTTGGTGGTGACCCTGGATGAGCGGGAGATCCGGCCGGAGCACCTGCCCCTGCCCGCACCCGGG
GGGCCGCCGGTGCAGGTGCGGGAGATCGTGCCGCTGAAGGAGGCGGTCGCAGCGCTGGAGCTGGAGCTGGTCGGGGAGGC
GTACCGCCGGTTCGGCAGCTCCGTGAAGGTGGGCCGGGCATTGGGGATCCACCAGACGACGGCCGCGCGCAAGATCCGGG
AGTGGAAGGCGCGGCAGGAGCGGACCGGGCGCGGGTAG

Upstream 100 bases:

>100_bases
GCGGGGTCGCCGGATCGCGGGCCGCCCCCCGTGTGGACTGGCCGGCCTAAGCATTCCTGCTTAGGTCCATAAGCAGGAAT
GGTTTGTATTCCAGAGAATT

Downstream 100 bases:

>100_bases
GGCGGGCGCGCAGAGGCCGCCGGGGCGGCGTGCGCTCCGGCGGCCAGGCGGTTCCGGGCCTGTGCGGTTCAGTCCTCGTT
GTTGCTGGGCCGGCGGGCGT

Product: sigma-54-dependent transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MICGSAGGMCMAPLAETVVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDRRPADLEDGDKWVPPVLRRCL
ETGERQAMVLERAGRRLALTAVPLPEGWVLATARDITELDRLERQVERMTQERERYRHELAGLRAGQAGRAEVVGSSLAM
QRVMDLIRRVAPVDSTILLLGESGVGKGVLAAEIHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPG
LIEQAHGGTLFIDEIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEAMVAEGRFRADLYYRLNVVPV
KIPPLRERPEDIPVLARTFLDRFCARYRVERTLTPEAVERLVAYSWPGNVRELENLVERLVVTLDEREIRPEHLPLPAPG
GPPVQVREIVPLKEAVAALELELVGEAYRRFGSSVKVGRALGIHQTTAARKIREWKARQERTGRG

Sequences:

>Translated_465_residues
MICGSAGGMCMAPLAETVVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDRRPADLEDGDKWVPPVLRRCL
ETGERQAMVLERAGRRLALTAVPLPEGWVLATARDITELDRLERQVERMTQERERYRHELAGLRAGQAGRAEVVGSSLAM
QRVMDLIRRVAPVDSTILLLGESGVGKGVLAAEIHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPG
LIEQAHGGTLFIDEIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEAMVAEGRFRADLYYRLNVVPV
KIPPLRERPEDIPVLARTFLDRFCARYRVERTLTPEAVERLVAYSWPGNVRELENLVERLVVTLDEREIRPEHLPLPAPG
GPPVQVREIVPLKEAVAALELELVGEAYRRFGSSVKVGRALGIHQTTAARKIREWKARQERTGRG
>Mature_465_residues
MICGSAGGMCMAPLAETVVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDRRPADLEDGDKWVPPVLRRCL
ETGERQAMVLERAGRRLALTAVPLPEGWVLATARDITELDRLERQVERMTQERERYRHELAGLRAGQAGRAEVVGSSLAM
QRVMDLIRRVAPVDSTILLLGESGVGKGVLAAEIHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPG
LIEQAHGGTLFIDEIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEAMVAEGRFRADLYYRLNVVPV
KIPPLRERPEDIPVLARTFLDRFCARYRVERTLTPEAVERLVAYSWPGNVRELENLVERLVVTLDEREIRPEHLPLPAPG
GPPVQVREIVPLKEAVAALELELVGEAYRRFGSSVKVGRALGIHQTTAARKIREWKARQERTGRG

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=465, Percent_Identity=35.6989247311828, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI1790437, Length=343, Percent_Identity=44.8979591836735, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI87082117, Length=302, Percent_Identity=46.6887417218543, Blast_Score=252, Evalue=4e-68,
Organism=Escherichia coli, GI1788550, Length=351, Percent_Identity=40.4558404558405, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI1789087, Length=256, Percent_Identity=48.828125, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI1788905, Length=233, Percent_Identity=50.6437768240343, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1790299, Length=247, Percent_Identity=47.7732793522267, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI1787583, Length=451, Percent_Identity=31.0421286031042, Blast_Score=215, Evalue=6e-57,
Organism=Escherichia coli, GI1786524, Length=319, Percent_Identity=38.871473354232, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI87081872, Length=234, Percent_Identity=43.5897435897436, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI87082152, Length=289, Percent_Identity=41.522491349481, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI87081858, Length=449, Percent_Identity=29.3986636971047, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1789828, Length=275, Percent_Identity=35.6363636363636, Blast_Score=138, Evalue=7e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR002078 [H]

Pfam domain/function: PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 51461; Mature: 51461

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICGSAGGMCMAPLAETVVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDR
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECHHHHHHHCCCHHHHHCC
RPADLEDGDKWVPPVLRRCLETGERQAMVLERAGRRLALTAVPLPEGWVLATARDITELD
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEHHHHHHHH
RLERQVERMTQERERYRHELAGLRAGQAGRAEVVGSSLAMQRVMDLIRRVAPVDSTILLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
GESGVGKGVLAAEIHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPG
ECCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
LIEQAHGGTLFIDEIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEA
CCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEEECCHHHHH
MVAEGRFRADLYYRLNVVPVKIPPLRERPEDIPVLARTFLDRFCARYRVERTLTPEAVER
HHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LVAYSWPGNVRELENLVERLVVTLDEREIRPEHLPLPAPGGPPVQVREIVPLKEAVAALE
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHH
LELVGEAYRRFGSSVKVGRALGIHQTTAARKIREWKARQERTGRG
HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MICGSAGGMCMAPLAETVVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDR
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECHHHHHHHCCCHHHHHCC
RPADLEDGDKWVPPVLRRCLETGERQAMVLERAGRRLALTAVPLPEGWVLATARDITELD
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEHHHHHHHH
RLERQVERMTQERERYRHELAGLRAGQAGRAEVVGSSLAMQRVMDLIRRVAPVDSTILLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
GESGVGKGVLAAEIHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPG
ECCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
LIEQAHGGTLFIDEIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEA
CCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEEECCHHHHH
MVAEGRFRADLYYRLNVVPVKIPPLRERPEDIPVLARTFLDRFCARYRVERTLTPEAVER
HHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LVAYSWPGNVRELENLVERLVVTLDEREIRPEHLPLPAPGGPPVQVREIVPLKEAVAALE
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHH
LELVGEAYRRFGSSVKVGRALGIHQTTAARKIREWKARQERTGRG
HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732229 [H]