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The map label for this gene is alr [H]

Identifier: 51598420

GI number: 51598420

Start: 159709

End: 160809

Strand: Direct

Name: alr [H]

Synonym: BG0158

Alternate gene names: 51598420

Gene position: 159709-160809 (Clockwise)

Preceding gene: 51598419

Following gene: 51598422

Centisome position: 17.66

GC content: 23.52

Gene sequence:

>1101_bases
ATGAGTAGTAACAAAACAATAATAATAAATTTAAATAATTTAGAACATAACTTAAATTTAATTAAAAATAAAATTGGTGA
AAAAGAAATAGTGGCTACCCTAAAAGGCGACGCATATGGTCACGGACTTATAAATATCTTTAAATTTTTTAAAGAAAAAA
AAATAAATTATTTTGGACTTTCTAATATTGAAGATGCTAAAACACTTAAAAAAATTGATAAAAATATAAAAATATTGATG
TACATTAAAGTAGATAAAAAAGAAATTAAAAATTTGATTAAACTTGAGTTATTACCATTTGTTGCAGATTTTGAATATCT
ATTTTTAATAGAAAAAGAATGTGCATTCCAAAAAAAGAAAATAAAAGTTCACTTAAAAATTGATATTGGCATGAATAGAT
ATGGAATAAGAATAGATAGTGCCCTTGAAATAGCTACATATATTCAAAATTCACAATTTCTAGAACTAGAAGGGATCTGC
TCACATCTTCCGGCAACAGAAAACTTTAAAACTACACAAAAACAAATAGAAAAATTTTTATTGGTTTTGGAAACACTTAA
ACAAAAAAATATAAATCCAAAATTTATCCATATTTCTAATTCGGGGCACATTATCAACTACAAACTAAATCCACAATTTA
ATATGGTAAGACCGGGTCTTATTCTTTACGGTTATTGTCAATCACTAAAAAACAAAAAAACTACCCTAAATTTCAAACCC
GTATTAAATTTATTTTCAAAAGTAATATTTATCAAAAATGTAAAAAAAGGGGAAAAAATTTCATATTCGGGCATATTTCA
AGCCAAAGAGGATATGAAAATAGGAATTATTCCAATCGGATATTTTGATGGAATACCTCAAAATATAAATAATAATTTTT
ATTTTTTAATAAACAATCAAAAATGTAAAATAAAGGGAAAGGTCTGCATGAACCTAACAATAGTAGAAATTCCTAAAAAC
TTAAAAGTTAGAATAGGTTCAAAAGTAGAAATTGTATCAGAAAAATTAAGTATAGATAAAATGAGTAAATTTTCTAAAAG
AAGTCATTATGAATTACTATGTAATATAGGAAAATATGAGAAAAGAAAATACTTAGATTAA

Upstream 100 bases:

>100_bases
AAATAAAAAAATTCCCAATACCCATTATAGAATAAATCACAAATCAATAGAAAAAAGATTCTTACTTCTCTAAGAGAGCT
AAATATATGATAATAAAAAA

Downstream 100 bases:

>100_bases
ATTGCCCAAAGAATCAAATTTTTGGAAATCTATTAAATTGCCTCTAGTATCATAAATCCACTTATAAATTGAAAATCCCC
CAACATCATCTCTTAATCTC

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSSNKTIIINLNNLEHNLNLIKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM
YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKKIKVHLKIDIGMNRYGIRIDSALEIATYIQNSQFLELEGIC
SHLPATENFKTTQKQIEKFLLVLETLKQKNINPKFIHISNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKP
VLNLFSKVIFIKNVKKGEKISYSGIFQAKEDMKIGIIPIGYFDGIPQNINNNFYFLINNQKCKIKGKVCMNLTIVEIPKN
LKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKYLD

Sequences:

>Translated_366_residues
MSSNKTIIINLNNLEHNLNLIKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM
YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKKIKVHLKIDIGMNRYGIRIDSALEIATYIQNSQFLELEGIC
SHLPATENFKTTQKQIEKFLLVLETLKQKNINPKFIHISNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKP
VLNLFSKVIFIKNVKKGEKISYSGIFQAKEDMKIGIIPIGYFDGIPQNINNNFYFLINNQKCKIKGKVCMNLTIVEIPKN
LKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKYLD
>Mature_365_residues
SSNKTIIINLNNLEHNLNLIKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILMY
IKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKKIKVHLKIDIGMNRYGIRIDSALEIATYIQNSQFLELEGICS
HLPATENFKTTQKQIEKFLLVLETLKQKNINPKFIHISNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKPV
LNLFSKVIFIKNVKKGEKISYSGIFQAKEDMKIGIIPIGYFDGIPQNINNNFYFLINNQKCKIKGKVCMNLTIVEIPKNL
KVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKYLD

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1790487, Length=372, Percent_Identity=28.7634408602151, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787439, Length=352, Percent_Identity=25, Blast_Score=141, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608
- InterPro:   IPR020622 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 42445; Mature: 42314

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNKTIIINLNNLEHNLNLIKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGL
CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEECC
SNIEDAKTLKKIDKNIKILMYIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKK
CCCHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCEEEEEEEHHHCCCEEE
IKVHLKIDIGMNRYGIRIDSALEIATYIQNSQFLELEGICSHLPATENFKTTQKQIEKFL
EEEEEEEEECCCEEEEEECCHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHH
LVLETLKQKNINPKFIHISNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKP
HHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCEECCCCEEEHHHHHHCCCCEEEEHHH
VLNLFSKVIFIKNVKKGEKISYSGIFQAKEDMKIGIIPIGYFDGIPQNINNNFYFLINNQ
HHHHHHHHHEEECCCCCCEEEECEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEECC
KCKIKGKVCMNLTIVEIPKNLKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYE
EEEEEEEEEEEEEEEECCCCCEEEECCEEEEHHHHHCHHHHHHHHCCCCEEEEECCCCCC
KRKYLD
HHCCCC
>Mature Secondary Structure 
SSNKTIIINLNNLEHNLNLIKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGL
CCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEECC
SNIEDAKTLKKIDKNIKILMYIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKK
CCCHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCEEEEEEEHHHCCCEEE
IKVHLKIDIGMNRYGIRIDSALEIATYIQNSQFLELEGICSHLPATENFKTTQKQIEKFL
EEEEEEEEECCCEEEEEECCHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHH
LVLETLKQKNINPKFIHISNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKP
HHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCEECCCCEEEHHHHHHCCCCEEEEHHH
VLNLFSKVIFIKNVKKGEKISYSGIFQAKEDMKIGIIPIGYFDGIPQNINNNFYFLINNQ
HHHHHHHHHEEECCCCCCEEEECEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEECC
KCKIKGKVCMNLTIVEIPKNLKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYE
EEEEEEEEEEEEEEEECCCCCEEEECCEEEEHHHHHCHHHHHHHHCCCCEEEEECCCCCC
KRKYLD
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]