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The map label for this gene is rnhB [H]

Identifier: 51598308

GI number: 51598308

Start: 45306

End: 45851

Strand: Direct

Name: rnhB [H]

Synonym: BG0045

Alternate gene names: 51598308

Gene position: 45306-45851 (Clockwise)

Preceding gene: 51598303

Following gene: 51598311

Centisome position: 5.01

GC content: 27.66

Gene sequence:

>546_bases
ATGATTTGCGGAATAGATGAAGTTGGAAGAGGCTGTATTTTTGGACCTGTTCTCAGTGCTGCTGTAGTTTTCAAAAAAAA
ACCTAACTTTATAAAAGAATTGGATGATTCTAAAAAACTAAAAAAAGAAAAAAGAGAGTACCTATCTTCATTAATACTTG
AAAACTCATATTATGCATTCGCTGAAATTTCAAATATAATAATAGAAAAAATAAATATTCACAACGCAACTCTTCTTGCA
ATGCAAACTGCATACGAAAACCTAAAATTAAATTGCAGTTTAGTATTTGTAGATGGTAAATTTGTCCCAAAAATAACAGC
AAAAACTGTTAAAGCAATAATTAAAGGAGATTCAATAATAGACGAAATAAAAGCTGCTTCAATTATTGCTAAAGTTAAAA
GAGATAAACTGATGGATGAATACGATAAAATTTATCCACTATATTTGCTCAGAAAAAATAAAGGATACCCCACAAAAGAA
CATAAAAATGCAATAAAGAAATATGGGGTTTTAAGCCTTCATAGAAGAAATTTTAAACTAATTTAA

Upstream 100 bases:

>100_bases
AAAACCAAACTAACTCCCAATTAAAATTAAAAAACAATTACTGATAAATCTACAATTTCATATTATAATAAATAAAAATA
TTTTTATAAAAAGGTTCATT

Downstream 100 bases:

>100_bases
AAAAATAATAAAAATCAATAATCCTTCTTTTTAAATCGTCCGCCTGATAAATGAGATTTATTCTGAAATCTAGAATCGTC
TAATTTAGATTTCTCTCCAT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFAEISNIIIEKINIHNATLLA
MQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIIDEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKE
HKNAIKKYGVLSLHRRNFKLI

Sequences:

>Translated_181_residues
MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFAEISNIIIEKINIHNATLLA
MQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIIDEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKE
HKNAIKKYGVLSLHRRNFKLI
>Mature_181_residues
MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFAEISNIIIEKINIHNATLLA
MQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIIDEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKE
HKNAIKKYGVLSLHRRNFKLI

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=180, Percent_Identity=39.4444444444444, Blast_Score=126, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 20643; Mature: 20643

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAF
CCCCCHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHH
AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII
HHHHHHHHHHHCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHH
DEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFKL
HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
I
C
>Mature Secondary Structure
MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAF
CCCCCHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHH
AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII
HHHHHHHHHHHCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHH
DEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFKL
HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA