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The map label for this gene is yrdD [H]

Identifier: 51597952

GI number: 51597952

Start: 4375447

End: 4376007

Strand: Reverse

Name: yrdD [H]

Synonym: YPTB3662

Alternate gene names: 51597952

Gene position: 4376007-4375447 (Counterclockwise)

Preceding gene: 51597953

Following gene: 51597951

Centisome position: 92.23

GC content: 46.7

Gene sequence:

>561_bases
ATGGCTTATATAGAAGGCGTTATGACGAAGAAAGTTATTACTAAGGATAATGGATCTTGTCCTGAGTGCGGGTCAGCGTT
GGTGATTCGCAGTGGGGGGCACGGTCCATTCCTTGGTTGTTCACATTATCCAGATTGCCAGTATATACGCCCACTAAAAG
CGCAGGCTGACGGGCATGTTGTGAAAACTCTGGAAGGGCAACCTTGTCCTGAGTGTGGTTCGGATATGGTGCTACGCCAA
GGCCGCTTCGGTATGTTTATTGGTTGCAGCCAATATCCACAGTGTGATCATACAGAAGTTATAGATAAACCTGATGAGAC
GTCTATTGATTGCCCACAGTGTGGTCAAGGGAAACTGTTACAACGTAAGTCTCGGTTTGGGAAAGTTTTTCATGCCTGTA
ATCGCTACCCCGACTGTCAATTTACGCTCAACCAACCGCCAATTGCAGGAAAGTGTGGTTATTGCCACTACCCACTGTTA
ATAGAAAAAAGAACGGCACGGGGTATCAAACGTATCTGTGCCAGTAAGTTATGTGGGAAGGCTGTAGCCAGTGAGTCATA
G

Upstream 100 bases:

>100_bases
TTCAATATACCGGGTTATGAAAATGCCTATAAGCAGATGGAAGAGCTGCTCTTTGAAGTCAATGACGGTTATTTGCACTA
GGTGCTAAGATTGCTGGCTA

Downstream 100 bases:

>100_bases
TATGAATCAACAAGAAAATAATTTTGTGCTGGCGGATATAGTGCGGGCATTGCGGCAAGAAGAGGTTATCGCTTATCCGA
CAGAAGCAGTTTTTGGTTTA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MAYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMVLRQ
GRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLL
IEKRTARGIKRICASKLCGKAVASES

Sequences:

>Translated_186_residues
MAYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMVLRQ
GRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLL
IEKRTARGIKRICASKLCGKAVASES
>Mature_185_residues
AYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMVLRQG
RFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLI
EKRTARGIKRICASKLCGKAVASES

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=172, Percent_Identity=68.6046511627907, Blast_Score=264, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20380; Mature: 20249

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
8.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHV
CCCHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
VKTLEGQPCPECGSDMVLRQGRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLL
EEECCCCCCCCCCCHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARGIKRICASKLCGK
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
AVASES
HHCCCC
>Mature Secondary Structure 
AYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHV
CCHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
VKTLEGQPCPECGSDMVLRQGRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLL
EEECCCCCCCCCCCHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARGIKRICASKLCGK
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
AVASES
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]