Click here to switch to the map view.

The map label for this gene is lsrB [H]

Identifier: 51597887

GI number: 51597887

Start: 4277282

End: 4278271

Strand: Reverse

Name: lsrB [H]

Synonym: YPTB3596

Alternate gene names: 51597887

Gene position: 4278271-4277282 (Counterclockwise)

Preceding gene: 51597890

Following gene: 51597886

Centisome position: 90.17

GC content: 47.47

Gene sequence:

>990_bases
ATGAAATTTAATCTCGCATTACTGAATGTATGTATCGTTTCTGCATGCATGCTGTTCACCACACAAACCCTGGCAGCAGA
GAAAAAACATGAGATTGCCGTTGTAGCGAAAGTGACCGGTATCCCCTGGTTTACCCGCATGGAAGTCGGGGTAAATGAAG
CCGCGAAGAAGCTGAATGTCAATGCCTATCAAGTCGGGCCAGCGACACCGGACCCTGCGCAACAAGTTAAAGTGATTGAA
GATCTTATCGCGAAAAATGTCGATGCCATTATTGTGGTGCCGAACGATGCCAAAGTGTTGGAGCCCGTGCTGAAGAAAGC
ACAGGAAAAAGGCATTGTGGTGCTGACGCATGAATCCCCAGATCAACGTATCGGGCAGTGGGACGTCGAAACTATCGATA
GCGAAAAATATGCTCAAGCCAATATGGATGAGCTGGCAAAAGCCATGGGTAATAAAGGTGGCTATGCCATTTATGTGGGT
TCCCTGACGGTGCCGTTACATAACGCTTGGGCTGATTACGCTATCAAATATCAGAAAGAAAAATACCCAGAAATGTTTGA
AGTCACGCCACGTTTACCGGTGGCAGAGAATATTGATAAGTCTTACTCCACCACGCTGGATCTGATGAAAACATATCCGC
AAATGAAAGGGATTATTGGTTTCGGTTCACTGGGGCCAATTGGTGCAGGTCAGGCGGTTGCCAAGAAACGGGCTAAGGAC
CAAATTGCGGTAGTGGGTATTGCGATGCCAGCACAGGCCGCGCCGTATCTGATGCGTGGCGATATCAAAAAAGCCTTGCT
GTGGGATCCAAAGGATGCCGGTTTTGCGGTAGTAGAAATTGCCAATCAATTGTTGAATGGCCAGAAAGTGACAGAAGATT
TGACCATCGATGGCTTGGGTAAAGCCGATGTGGACAGTAAGAACGGGGTGATCCGTTTTAACAAGATCCTCGAGGTCACC
AAAGATAATGCCAAAACGTTAGGCTTCTGA

Upstream 100 bases:

>100_bases
ATGATAGTGACGTGAAAATAAAACAATCACTTTGCAACATAATAAGATTTCTTACCTTGCAACCGTTCCGTTACCTGAAA
GAAAACAAGAAGGTATTGCT

Downstream 100 bases:

>100_bases
TTTTCAGGTGCCACACCAGGGAATTGGCCGCAGATTCATCGTGGCCAGCAGTAAGAGATTCGTTATCAGTACAGTAAGCT
GTCAGTAATGCAGTAAGTTA

Product: ABC transporter, periplasmic sugar binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKKLNVNAYQVGPATPDPAQQVKVIE
DLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAIYVG
SLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKD
QIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTIDGLGKADVDSKNGVIRFNKILEVT
KDNAKTLGF

Sequences:

>Translated_329_residues
MKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKKLNVNAYQVGPATPDPAQQVKVIE
DLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAIYVG
SLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKD
QIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTIDGLGKADVDSKNGVIRFNKILEVT
KDNAKTLGF
>Mature_329_residues
MKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKKLNVNAYQVGPATPDPAQQVKVIE
DLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAIYVG
SLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKD
QIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTIDGLGKADVDSKNGVIRFNKILEVT
KDNAKTLGF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=306, Percent_Identity=28.1045751633987, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35813; Mature: 35813

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKKLNV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCHHHHHHHCCC
NAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESP
CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCC
DQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAIYVGSLTVPLHNAWADYAIKYQKE
HHHCCCCCHHHCCCHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHEEECHH
KYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKD
CCCHHEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHCCC
QIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTIDGLG
CEEEEEEECCCCCCCCHHHCCCCHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCC
KADVDSKNGVIRFNKILEVTKDNAKTLGF
CCCCCCCCCEEEEEHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKKLNV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCHHHHHHHCCC
NAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESP
CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCC
DQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAIYVGSLTVPLHNAWADYAIKYQKE
HHHCCCCCHHHCCCHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHEEECHH
KYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKD
CCCHHEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHCCC
QIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTIDGLG
CEEEEEEECCCCCCCCHHHCCCCHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCC
KADVDSKNGVIRFNKILEVTKDNAKTLGF
CCCCCCCCCEEEEEHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA