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The map label for this gene is rbsC [H]

Identifier: 51597885

GI number: 51597885

Start: 4274600

End: 4275589

Strand: Reverse

Name: rbsC [H]

Synonym: YPTB3594

Alternate gene names: 51597885

Gene position: 4275589-4274600 (Counterclockwise)

Preceding gene: 51597886

Following gene: 51597884

Centisome position: 90.11

GC content: 51.21

Gene sequence:

>990_bases
ATGGATAAGCTAAAACTGCGCCAACTCACGGGGCACCATGAGTTTTATCTCGGGTTGCTGGTGTTGCTGTTGGCTATCGG
GTTGAGTGTGCAAAGCCCTGAGTTCCTGACATTGGGGAATTTAACCGATGTGGCGACCAGTTATGCCATTTTGGGGATTT
TAGCCTGCGGTCTATTTGTGGTGCTGATTGCTGGTGGCATTGATATCTCTTTCCCGGCGGTCACGGCTATCGCGCAGTAT
GTGATGGCATCGTGGGTGATTACACAGGGTGGCAGCTTCACGCTGGCATTGGTCATGGCAATGGCGGTTGGCCTGTTGCT
GGGGCTGATCAACGGATTACTGGTTTATTGGCTGAAAGTCCCGGCGATCATTATCACCATCGCCACGCTGAATCTGTTCT
ATGGGCTGCTGGTTTACTTTACCAACGGGACTTGGTTGTACGGCTTCCCAGACTGGTTTATGACCGGTATTAACTGGTTC
TCATTTGAAGGCAGTGACGGTTACGACTACGGCCTGACACTGCCGCTGTTATGTCTGGCGGGCACCATCATCTTCACCGG
TGTCATGATGAATTACACCCGGTTAGGGCGGCAGATTTTTGCCATGGGCAGCAATAAAGATGCCGCCTCTCGTCTTGGCA
TTAACATCTTTCGGTTGCACCTGTATGTCTACGGCTACATGGGCATATTGGCAGGCGTGGCAGCGGTAGTACAGGCTCAG
ATTTCCCAATCAGTCGCACCTAACTCTTTGATGGGATTTGAGTTAACGGTATTGGCTGCGGTGGTCCTTGGTGGCACCAG
TATGAGCGGTGGACGCGGATCACTGACCGGAACGGTGCTGGGTGTCATGTTATTGGCTTTTCTGCAAAACGGCTTAACGC
TGCTGAGTGTCTCTTCTTATTGGCATACCGTTTTCAGTGGCGTGATTATTTTGGTAAGTATCAGTACCACCGCGTGGAAT
GAAAAACGCAAGTTGTTGAGGGAGCACTGA

Upstream 100 bases:

>100_bases
TATTACAACAGCCACCGGGTGCTGGTGATGCGTAAAGGCGAATTGATCGCCGAGTTTTATCCTCATCAGTGTACCGAACA
ACAGATCGCCGAGGTGGTCA

Downstream 100 bases:

>100_bases
GATGACCTGGTTAAACCGAATTATCCCTGATGACCGTATTATCCGCCTGCAATTATTGATTCTGATTGCGGTGATGTTGG
TCTTCTCACTGACTCTGGGG

Product: ABC sugar transporter, permease subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFVVLIAGGIDISFPAVTAIAQY
VMASWVITQGGSFTLALVMAMAVGLLLGLINGLLVYWLKVPAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWF
SFEGSDGYDYGLTLPLLCLAGTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSYWHTVFSGVIILVSISTTAWN
EKRKLLREH

Sequences:

>Translated_329_residues
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFVVLIAGGIDISFPAVTAIAQY
VMASWVITQGGSFTLALVMAMAVGLLLGLINGLLVYWLKVPAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWF
SFEGSDGYDYGLTLPLLCLAGTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSYWHTVFSGVIILVSISTTAWN
EKRKLLREH
>Mature_329_residues
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFVVLIAGGIDISFPAVTAIAQY
VMASWVITQGGSFTLALVMAMAVGLLLGLINGLLVYWLKVPAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWF
SFEGSDGYDYGLTLPLLCLAGTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSYWHTVFSGVIILVSISTTAWN
EKRKLLREH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=300, Percent_Identity=35.6666666666667, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=30.1282051282051, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=30.3125, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=30.2013422818792, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=30.4195804195804, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787794, Length=319, Percent_Identity=28.5266457680251, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=33.0882352941176, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788471, Length=320, Percent_Identity=31.875, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=31.0077519379845, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35423; Mature: 35423

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFV
CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
VLIAGGIDISFPAVTAIAQYVMASWVITQGGSFTLALVMAMAVGLLLGLINGLLVYWLKV
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWFSFEGSDGYDYGLTLPLLCLA
HHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCEEEECCCCCCCCCHHHHHHHHH
GTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
HHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSY
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHH
WHTVFSGVIILVSISTTAWNEKRKLLREH
HHHHHHHHEEEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFV
CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
VLIAGGIDISFPAVTAIAQYVMASWVITQGGSFTLALVMAMAVGLLLGLINGLLVYWLKV
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWFSFEGSDGYDYGLTLPLLCLA
HHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCEEEECCCCCCCCCHHHHHHHHH
GTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
HHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSY
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHH
WHTVFSGVIILVSISTTAWNEKRKLLREH
HHHHHHHHEEEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]