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The map label for this gene is yrbK

Identifier: 51597815

GI number: 51597815

Start: 4191587

End: 4192150

Strand: Direct

Name: yrbK

Synonym: YPTB3523

Alternate gene names: 51597815

Gene position: 4191587-4192150 (Clockwise)

Preceding gene: 51597814

Following gene: 51597816

Centisome position: 88.34

GC content: 45.57

Gene sequence:

>564_bases
ATGAGCAAGACAAGACGCTGGATAACACTGGTACTGGCACTGATTGCGTTAGCCTTGATTGGCTGGAATATGTCAGGTTT
TAATCAACAAGGTGCGCCAGTAGTGGCTGATGATAATGAGCCATCGTCGCAAAGCCAGCATACGGTAACGACTGTTTTTA
ATCCGGTCGGTCAACTGAATTACAAGTTAGTCGCCGAAGAGGTTCAGAATTTTAGCGCGAAGGAACTAACTTGGTTTACC
AAACCGGTCATGACCCTGTTTGGTGACAATGCGGTGGCAACTTGGACAGTGCGCGCTGATCGCGCCAAGCTGACTGATGA
TAAAATGCTTTATCTGTATGGTCATGTTGAGGTTGATAGCCTGACCGCCGATGCGCAGTTAAAAAAAATTCGAACGGATA
ACGCCCAAGTGAATCTAATTACCCAAGATGTCGCCTCAGACGATGAAGTGACCCTTTTCGGTATTGGATTTACCTCTGAA
GGCATGAGAATGCGTGGTAACTTGCGGGACAAAACCGCTGAGCTGATTGAAAAGGTTAAAACCTCTTATGAAATCCAAAA
ATAA

Upstream 100 bases:

>100_bases
ATGTGACTCGAATCAAGGGGGGCCGGGGGGCGGTACGTGAAGTATGTGATTTGATATTATTGGCCCAAGACAAGCTCGAA
GGGGCCACAGGATTATCAAT

Downstream 100 bases:

>100_bases
AATAAGTCATCTTTTACTTGCCTGCTCACTTTTAGCCGCAAGCCTGTCTGCATTCGCATTAACTGGCGATACAGAACAAC
CTGCCGAGGTCAAATCCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLNYKLVAEEVQNFSAKELTWFT
KPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDSLTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSE
GMRMRGNLRDKTAELIEKVKTSYEIQK

Sequences:

>Translated_187_residues
MSKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLNYKLVAEEVQNFSAKELTWFT
KPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDSLTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSE
GMRMRGNLRDKTAELIEKVKTSYEIQK
>Mature_186_residues
SKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLNYKLVAEEVQNFSAKELTWFTK
PVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDSLTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSEG
MRMRGNLRDKTAELIEKVKTSYEIQK

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=186, Percent_Identity=56.4516129032258, Blast_Score=232, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 20919; Mature: 20788

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLN
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEHHEECCCCHHHH
YKLVAEEVQNFSAKELTWFTKPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEC
LTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSEGMRMRGNLRDKTAELIEKVK
CCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHH
TSYEIQK
HHCCCCC
>Mature Secondary Structure 
SKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLN
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEHHEECCCCHHHH
YKLVAEEVQNFSAKELTWFTKPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEC
LTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSEGMRMRGNLRDKTAELIEKVK
CCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHH
TSYEIQK
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]