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The map label for this gene is exbD [H]

Identifier: 51597680

GI number: 51597680

Start: 4015142

End: 4015567

Strand: Reverse

Name: exbD [H]

Synonym: YPTB3382

Alternate gene names: 51597680

Gene position: 4015567-4015142 (Counterclockwise)

Preceding gene: 51597681

Following gene: 51597663

Centisome position: 84.63

GC content: 48.59

Gene sequence:

>426_bases
ATGCGAATGAATGATTCCCTCGACGAGAGTGGAGAATTACACGAAATTAACGTGACGCCGTTTATTGATGTCATGTTGGT
GCTGCTGATTATCTTTATGGTCGCCGCGCCGTTGGCAACGGTAGATATCAAAGTGGATCTACCTGCATCTTCGGCAGTAC
CGCAGCCGCGGCCAGAGAAACCGGTATTCTTGACGGTTAAAGCGGATAACCAGCTTTATGTCGGCGACCAGCCAGTTGAC
CGTGAAACATTAGCCGCGGCACTGGACAAAGTGACCCAATCCAATAAAGAAACCACGATTTTCTTCCAGGCAGATAAAGT
GGTGGATTATGAAACCTTGATGAGCGTGATGGATGCGCTACGTAAATCAGGCTATCTCAAAGTTGGGTTAGTGGGTATGG
AAGCAGGGTCCAGCGGCGCAAAATAA

Upstream 100 bases:

>100_bases
AGTGTTACTGCTGTTGAGCCGTGATTTGGATTTGGCCAGTAGCGCCGAAGTAAAGTCCCCTCGCCATCCTCATCAATTAC
GAGCAGGGTGATTTATGGCA

Downstream 100 bases:

>100_bases
TTTTTTGCAAGCGCGGTTACTGTTACCGCGCTTGCATCAACTTTGGTTTTTGAGGAAATTTCAGTTTTTAGGTCAATATC
GATTTTTAAGTCAATTTCAG

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVFLTVKADNQLYVGDQPVD
RETLAAALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKSGYLKVGLVGMEAGSSGAK

Sequences:

>Translated_141_residues
MRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVFLTVKADNQLYVGDQPVD
RETLAAALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKSGYLKVGLVGMEAGSSGAK
>Mature_141_residues
MRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVFLTVKADNQLYVGDQPVD
RETLAAALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKSGYLKVGLVGMEAGSSGAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=66.6666666666667, Blast_Score=204, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15343; Mature: 15343

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEK
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCC
PVFLTVKADNQLYVGDQPVDRETLAAALDKVTQSNKETTIFFQADKVVDYETLMSVMDAL
CEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHHHHHHHH
RKSGYLKVGLVGMEAGSSGAK
HHCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEK
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCC
PVFLTVKADNQLYVGDQPVDRETLAAALDKVTQSNKETTIFFQADKVVDYETLMSVMDAL
CEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHHHHHHHH
RKSGYLKVGLVGMEAGSSGAK
HHCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]