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The map label for this gene is flgD

Identifier: 51597638

GI number: 51597638

Start: 3971673

End: 3972329

Strand: Reverse

Name: flgD

Synonym: YPTB3338

Alternate gene names: 51597638

Gene position: 3972329-3971673 (Counterclockwise)

Preceding gene: 51597639

Following gene: 51597637

Centisome position: 83.72

GC content: 51.75

Gene sequence:

>657_bases
ATGCAGATTAATGAAAGCAGAAATTCAGCCAATGTTGGCAATCAATCCCCAGCACCTGAAGGTGGCCTGCCGGGAGGGGA
GCAGTTAAATAACCAATTTATGACCTTGTTGGTGGCGCAGATTAAAAATCAAGACCCACTGAACCCGGCAGATGGTACCG
AGTTTGTTAGCCAAATGGCGCAACTCTCGCAGGTTCAGGCCACGGAGAACATGGCAAAGCTGCTCAAGAGCAATACCGTT
CAGATGGCGAAAATGCAGACCATGGCAACGGCCAATTTGGTTGGGCAGCAAGTGATGGTTGAAGGCCATGAAATTACCTT
AGGTAAGGACCGTGTTGCCGGGCGCTTAACGCTGAAACAGCCTGCCCCGACGCTGTTACTGCACATCACTGACATCTTGG
GCCAAGAAAAGGTTATCGATTTGGGTAAACAACCGGCGGGTCCGGTGAATTTCACGCTTGATCCGGCAGTGGCCAAGCTC
CAACCCGGCCAATACCAACTGAGTGCCGTCAGTGGCAGTGGGGAAGAACTGATTCCGCTAGAAGTGGCAGGCAAAGTGAA
CAACGTGCGTATTTCACCACAAGGTGGTGCAGCGCAACTGAATATTACCGGCCTTGGCGAGGTTTCATACAGCCAAATCA
CACAATTCGGGGCCTAG

Upstream 100 bases:

>100_bases
ACATGATGTCAGCATCGCGCAGCTTTGAGACCAATGTTGAAGTATTGAACAGTGTGAAAAGCATGCAGCAGAGTGTGTTA
AAGCTTGGAGAGCGCTAACT

Downstream 100 bases:

>100_bases
CCCGCACGGTCAATATCACCCTATTAATCCATCTTATTTATACGGAAATATGTTATGAGTTTTAGTATCGCTAATACCGC
GTTGAATGCACATACCGAAC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTV
QMAKMQTMATANLVGQQVMVEGHEITLGKDRVAGRLTLKQPAPTLLLHITDILGQEKVIDLGKQPAGPVNFTLDPAVAKL
QPGQYQLSAVSGSGEELIPLEVAGKVNNVRISPQGGAAQLNITGLGEVSYSQITQFGA

Sequences:

>Translated_218_residues
MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTV
QMAKMQTMATANLVGQQVMVEGHEITLGKDRVAGRLTLKQPAPTLLLHITDILGQEKVIDLGKQPAGPVNFTLDPAVAKL
QPGQYQLSAVSGSGEELIPLEVAGKVNNVRISPQGGAAQLNITGLGEVSYSQITQFGA
>Mature_218_residues
MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTV
QMAKMQTMATANLVGQQVMVEGHEITLGKDRVAGRLTLKQPAPTLLLHITDILGQEKVIDLGKQPAGPVNFTLDPAVAKL
QPGQYQLSAVSGSGEELIPLEVAGKVNNVRISPQGGAAQLNITGLGEVSYSQITQFGA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=170, Percent_Identity=34.7058823529412, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23022; Mature: 23022

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEITLGKDRVAGRLTLKQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCCEEEEECC
PAPTLLLHITDILGQEKVIDLGKQPAGPVNFTLDPAVAKLQPGQYQLSAVSGSGEELIPL
CCCCHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCHHHHCCCCCEEEEEECCCCCEEEEE
EVAGKVNNVRISPQGGAAQLNITGLGEVSYSQITQFGA
EECCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHCCC
>Mature Secondary Structure
MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEITLGKDRVAGRLTLKQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCCEEEEECC
PAPTLLLHITDILGQEKVIDLGKQPAGPVNFTLDPAVAKLQPGQYQLSAVSGSGEELIPL
CCCCHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCHHHHCCCCCEEEEEECCCCCEEEEE
EVAGKVNNVRISPQGGAAQLNITGLGEVSYSQITQFGA
EECCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]