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The map label for this gene is yspR

Identifier: 51597561

GI number: 51597561

Start: 3838074

End: 3838817

Strand: Reverse

Name: yspR

Synonym: YPTB3259

Alternate gene names: 51597561

Gene position: 3838817-3838074 (Counterclockwise)

Preceding gene: 51597564

Following gene: 51597559

Centisome position: 80.91

GC content: 38.44

Gene sequence:

>744_bases
ATGCATTCTGTTTTCAATAGGAGTAACGAGGTAATAGAAACACTGCGTGATTATATCGACAGAAAACTTACCATCTACGA
CAGTCCAAAATATACCTATATGGTGATCAATAAAAAGAATCCAGGCGATATTTTCATTGTCACTAGCTACCCAAATGAAT
GGGCTGAACTCTATACAAATAATAACTACCAGAATATAGATCCTGTTGTCCTGATCGCTTTCAGGCGGTTCTCTCCGTTC
TCTTGGGATGAAAATATTACTGTCCTTTCTGAACTGAAATTATCAAAAATCTTCACACTCTCTAAGAAATATAACATTGT
TAATGGTTTCACTTTTGTTCTGCACGATACGATGAATAATTTGGCAATGTTGTCACTCATTATGGATGATAGTGCTCTGA
ATGGAGTAGAAAGTAGAGTGTTGAATGATAGGGACAGGCTACAAATGCTCCTGATAGAAACCCATGAAAAGATGCTTACA
TTGAGTCAAAGAAATATGAATATCCAGGAACGCCAGGGGAAAGGTATGCCCGGTAAAGCCATTCTATCCCCGCGAGAAAA
TGAAGTGCTCTACTGGGCCAGCATGGGAAAAACCTATCAAGAGATTGCCATAATCACAAATATCACCCCCAGAACAGTAA
AATATCACATAGGAAATGTGGTAAAAAAGTTGGGTGTAATTAACGCAAAACAGGCAATCGGGCTTGGTGTTGAACTGGAA
ATTATTAAGCCGATTCTGGCATAA

Upstream 100 bases:

>100_bases
TCAACTTACTCTATCCATTATACGGGAACGGGTATGGGGCGGTAGTTGTACTAAGGTGCAATTTCCTATTGCACCTTAGT
ACAGTAAATGGAGAAAGGGA

Downstream 100 bases:

>100_bases
CGGGCAACGATATAGGCCATGTACTTAATACTGAACATGGATCCTGCAAACGCTGATTAACCTGTAAAAGCAGCCGTGCT
TGATTGTCCCGATCTATCGG

Product: quorum-sensing transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPF
SWDENITVLSELKLSKIFTLSKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLT
LSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELE
IIKPILA

Sequences:

>Translated_247_residues
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPF
SWDENITVLSELKLSKIFTLSKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLT
LSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELE
IIKPILA
>Mature_247_residues
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPF
SWDENITVLSELKLSKIFTLSKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLT
LSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELE
IIKPILA

Specific function: Probable transcriptional activator. Binds to an autoinducer molecule [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=218, Percent_Identity=26.1467889908257, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28451; Mature: 28451

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTN
CCCHHCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCEEEEECCCCHHHHHHCC
NNYQNIDPVVLIAFRRFSPFSWDENITVLSELKLSKIFTLSKKYNIVNGFTFVLHDTMNN
CCCCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHEEHHHCCCEECCEEEEEEHHHHH
LAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTLSQRNMNIQERQGKGMPGKA
HEEHHHHHCCCHHHHHHHHHCCCHHHHEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCE
ILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELE
ECCCCCCCEEEEECCCCCHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHCCCEEHH
IIKPILA
HHHHHCC
>Mature Secondary Structure
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTN
CCCHHCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCEEEEECCCCHHHHHHCC
NNYQNIDPVVLIAFRRFSPFSWDENITVLSELKLSKIFTLSKKYNIVNGFTFVLHDTMNN
CCCCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHEEHHHCCCEECCEEEEEEHHHHH
LAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTLSQRNMNIQERQGKGMPGKA
HEEHHHHHCCCHHHHHHHHHCCCHHHHEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCE
ILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELE
ECCCCCCCEEEEECCCCCHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHCCCEEHH
IIKPILA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA