| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is 51597448
Identifier: 51597448
GI number: 51597448
Start: 3694060
End: 3696615
Strand: Direct
Name: 51597448
Synonym: YPTB3137
Alternate gene names: NA
Gene position: 3694060-3696615 (Clockwise)
Preceding gene: 51597447
Following gene: 51597452
Centisome position: 77.86
GC content: 51.49
Gene sequence:
>2556_bases ATGACCAGTAAGCGCGGCAGATTTCAGCCCACCCCGCCCCAACCTTACCCCGGCAGCGATGAAACGTTTGCCGGGGTTTA CTCTTGGAACAAATCTAAGTCCAGCATAAACCCACGGCTAGATATTGATCTGCCCCTCCAGTTTAGCCCCCTGTCGTTAG TCATTGATGCATACTATAAAGACGCGAAAGCCGCGCTGGCGGGCATTGATGCTCTACTTACTGACGACGAGCGAAAAGCC AGGGCGAAACGTCAGCGATTTATAGAATGCTTTGAAGATGCGGAAGAATCGCGAGAACTCTTTTTAGCACGACTGACTGA ATCTAAAAAAGCCGAACGTCATAACCGCGCTTTAGAAACTCAGGCCAATCTCAATAGTCAACATAAATTTATTCGTCAGC CATTACAGCGCCGCATTGATTACTTACGTCAAGAACGTGGCGACAAACAGGCCAATGTTTTTTTAAATCAATTGGTTGAG AAAGCATTATTACGTTTGGACGCGATGAGAGTAAAGCAACAAACGGTATCACTCCGACACATTGCCAACCGAGAGCGGTT AGACGGTCTGCTCAATTTGGCCGCACTCAATAAAAAAGAGGTCACTACCCTGGCAACAATGGCCGCCGCGCACATGGATA TGTTACTTGATAGTCAGATGGCAACCCTGCCCACTGAAAATGCCACGCCGCGCCAGATATTACGCCTCTACCACGCGCTA GCTAACGAAGCTAAAAAGCTATCAATCACCCCCCCGAATTGGGACGCCCTCAACGATAAATTGCGCCGTAGAGGTGAAAT ACCTTATGACCTGATCCCCGGTGCGCTGGCTCGCTTGCGTTGCGCGACGTGGTGGAGAGGCCGGTTATGGCGGCTGCGTT GTCAGTGGCGAGAGGAACAATTACGCGCTGTCATGTTAGTACACAAACACGCGTCACCCTACATCAGCTCAGAGGCCTTG ATTCAGCAGCGTGAGCAGTGGCGGCGCTCCGCTGAGTTTATCCGTGCTCATGATTTAGTTAATGACGCCGGTTTTGTCAT GAATATGGAAGACGTAGTTAACGCCAGCGCCAGTAACCCACACTTACGTTATATCGAAATGATGACGACCTGTAAGGGTT TAGAAAACTTGGCAGAAATGCGCGGGGATAAAGCGATGTTTTACACGATCACCTGCCCGTCCAAGTATCACGCCACGCTG AAAAGCGGCAAACGTAATCCCAAATGGAGTACAAAAACTGTCAAGGAAAGCAGTGATTACCTGGTCAACCTGTTTGCCGG TATCAGGAAAAAACTCAGTCGTTTGGGTCTGCGCTGGTACGGCGTCCGCATTGCCGAGCCTCACCATGACGGCACGGTTC ACTGGCATTTAATGTGCATCATGCAAAAACAAGACCGCGCCGCAATCACTCAAGTGATGCGGGATTTTGCTATCCGTGAA GACCGCCAAGAATTAGGGCGGGATATTAAACCTCGCTTTGATGTTAAACCGGTGCTCAAAAGCAAAGGCACTATCACCAG TTACTTAACAAAGTACCTGGGTAAGAACGTGCGTGGCAGTAACCTTAAGGGGAAGTTGGACAAAGCGACCGGTAAGCCGA TTGTCAGTAAAGAAACCGGGCAACCATTGGGCGAAGACACCGAAAGAGCGGTTGCCTGGGCTTCTCTTCACGGCGTTCAG CAATTCCGCTTTTTTGGCATACCTTCCCGCCAGGCATACCGCGAATTACGCTTATTGGCCGGCCAGCTTCAACGCCAAGC CAAGCCGGAACAGGGGAAGTGGAAACAGGTATTACCTAATAAAGCGATGGATGATGTGCTGGCCGCAGCGGACGCCGGCT GCATGGCAACGTACATCCTAAAACAAGGCGGCGTTCTGGAACCCCGCAGCAACCATCTGATCCGCACCGCTTACATTGAA TCCGAAACCCCCAACGATTACGGCGAACTTGGCACCAAGATTTATGGCGTCTGGGCACCGAGCCTAGGCGATGAATCTCG GATATGTACCCACGCTGACAATTGGAAAATGGTACGCAAGACAGGCAGCGACGACAGCCAAACTAAGGCCAGCGAAGCGG CCGCAGGGGTTGACCTGGGTTTTGATTTTGCAGTTGGGGCCGGCGGTATCGGCCCTTGGACTCGTGGCAATAAGTGTCCC CCCCCCGCCGACGAAGCCCCAAAACAGCGTAAAAAACGGACAACGCCAGCGCCTGATCTAAGCGATTTCAACAAAATATC GTTCACCCAGCGAAGGGAAATGCGCGAAAGATTGCGGAAATTACCGCCGCCGAGGCTCGGCGGTGACGACGAGGACGTAA AACCCCGAACTCAGCCGGCCAATGCGCCAATACCTTCGGCTGAAATGTGCCAAAAAATCGACCAGGCGGCGCAACGTAGC GGCTGGATATTGGAAAAACGGCAAATAAGCACGTTAGCCAGGGGCGGAAATGTGACTTTTCCCAACAAAATGACCGTAAG AGTAGACCAAGAACGCCGGGAACAAGGGGAAGTGAAGTTAATTAAGGCGTTTGATACACATCGAGCACAGACATAA
Upstream 100 bases:
>100_bases GATTCATTGCGGAAAAAATGGAAATGCCGGTCAATGCCGTATACGGAATCATTTATTACAGCACACGTCGAACACCCACA CCTGGCGGCTCATTCCAGCA
Downstream 100 bases:
>100_bases CCGTCTATGCGGTACCGATTGCCATGCAACACAGCCGGTTATGACTGTGTTGGCCATAGAAATATTACCTGCAGCACAGT CATTTTTAACTATTGAGGTT
Product: phage protein.
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 851; Mature: 850
Protein sequence:
>851_residues MTSKRGRFQPTPPQPYPGSDETFAGVYSWNKSKSSINPRLDIDLPLQFSPLSLVIDAYYKDAKAALAGIDALLTDDERKA RAKRQRFIECFEDAEESRELFLARLTESKKAERHNRALETQANLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQLVE KALLRLDAMRVKQQTVSLRHIANRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATLPTENATPRQILRLYHAL ANEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQLRAVMLVHKHASPYISSEAL IQQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNPHLRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATL KSGKRNPKWSTKTVKESSDYLVNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRE DRQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETGQPLGEDTERAVAWASLHGVQ QFRFFGIPSRQAYRELRLLAGQLQRQAKPEQGKWKQVLPNKAMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIE SETPNDYGELGTKIYGVWAPSLGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPWTRGNKCP PPADEAPKQRKKRTTPAPDLSDFNKISFTQRREMRERLRKLPPPRLGGDDEDVKPRTQPANAPIPSAEMCQKIDQAAQRS GWILEKRQISTLARGGNVTFPNKMTVRVDQERREQGEVKLIKAFDTHRAQT
Sequences:
>Translated_851_residues MTSKRGRFQPTPPQPYPGSDETFAGVYSWNKSKSSINPRLDIDLPLQFSPLSLVIDAYYKDAKAALAGIDALLTDDERKA RAKRQRFIECFEDAEESRELFLARLTESKKAERHNRALETQANLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQLVE KALLRLDAMRVKQQTVSLRHIANRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATLPTENATPRQILRLYHAL ANEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQLRAVMLVHKHASPYISSEAL IQQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNPHLRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATL KSGKRNPKWSTKTVKESSDYLVNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRE DRQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETGQPLGEDTERAVAWASLHGVQ QFRFFGIPSRQAYRELRLLAGQLQRQAKPEQGKWKQVLPNKAMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIE SETPNDYGELGTKIYGVWAPSLGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPWTRGNKCP PPADEAPKQRKKRTTPAPDLSDFNKISFTQRREMRERLRKLPPPRLGGDDEDVKPRTQPANAPIPSAEMCQKIDQAAQRS GWILEKRQISTLARGGNVTFPNKMTVRVDQERREQGEVKLIKAFDTHRAQT >Mature_850_residues TSKRGRFQPTPPQPYPGSDETFAGVYSWNKSKSSINPRLDIDLPLQFSPLSLVIDAYYKDAKAALAGIDALLTDDERKAR AKRQRFIECFEDAEESRELFLARLTESKKAERHNRALETQANLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQLVEK ALLRLDAMRVKQQTVSLRHIANRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATLPTENATPRQILRLYHALA NEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQLRAVMLVHKHASPYISSEALI QQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNPHLRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATLK SGKRNPKWSTKTVKESSDYLVNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRED RQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETGQPLGEDTERAVAWASLHGVQQ FRFFGIPSRQAYRELRLLAGQLQRQAKPEQGKWKQVLPNKAMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIES ETPNDYGELGTKIYGVWAPSLGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPWTRGNKCPP PADEAPKQRKKRTTPAPDLSDFNKISFTQRREMRERLRKLPPPRLGGDDEDVKPRTQPANAPIPSAEMCQKIDQAAQRSG WILEKRQISTLARGGNVTFPNKMTVRVDQERREQGEVKLIKAFDTHRAQT
Specific function: Possible endonuclease which induces a single-strand cut and initiates DNA replication (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage GPA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020220 - InterPro: IPR008766 - ProDom: PD092055 [H]
Pfam domain/function: PF05840 Phage_GPA [H]
EC number: NA
Molecular weight: Translated: 96729; Mature: 96598
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKRGRFQPTPPQPYPGSDETFAGVYSWNKSKSSINPRLDIDLPLQFSPLSLVIDAYYK CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH DAKAALAGIDALLTDDERKARAKRQRFIECFEDAEESRELFLARLTESKKAERHNRALET HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QANLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQLVEKALLRLDAMRVKQQTVSLRH HHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IANRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATLPTENATPRQILRLYHAL HHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ANEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQ HCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH LRAVMLVHKHASPYISSEALIQQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNP HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCC HLRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATLKSGKRNPKWSTKTVKESSDY CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCHHHHCCHHH LVNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRE HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH DRQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETG HHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCC QPLGEDTERAVAWASLHGVQQFRFFGIPSRQAYRELRLLAGQLQRQAKPEQGKWKQVLPN CCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC KAMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIESETPNDYGELGTKIYGVWAP HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCEEEEEECC SLGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPWTRGNKCP CCCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PPADEAPKQRKKRTTPAPDLSDFNKISFTQRREMRERLRKLPPPRLGGDDEDVKPRTQPA CCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC NAPIPSAEMCQKIDQAAQRSGWILEKRQISTLARGGNVTFPNKMTVRVDQERREQGEVKL CCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCCCCEEEEECHHHHCCCCEEE IKAFDTHRAQT EEEHHHCCCCC >Mature Secondary Structure TSKRGRFQPTPPQPYPGSDETFAGVYSWNKSKSSINPRLDIDLPLQFSPLSLVIDAYYK CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH DAKAALAGIDALLTDDERKARAKRQRFIECFEDAEESRELFLARLTESKKAERHNRALET HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QANLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQLVEKALLRLDAMRVKQQTVSLRH HHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IANRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATLPTENATPRQILRLYHAL HHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ANEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQ HCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH LRAVMLVHKHASPYISSEALIQQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNP HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCC HLRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATLKSGKRNPKWSTKTVKESSDY CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCHHHHCCHHH LVNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRE HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH DRQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETG HHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCC QPLGEDTERAVAWASLHGVQQFRFFGIPSRQAYRELRLLAGQLQRQAKPEQGKWKQVLPN CCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC KAMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIESETPNDYGELGTKIYGVWAP HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCEEEEEECC SLGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPWTRGNKCP CCCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PPADEAPKQRKKRTTPAPDLSDFNKISFTQRREMRERLRKLPPPRLGGDDEDVKPRTQPA CCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC NAPIPSAEMCQKIDQAAQRSGWILEKRQISTLARGGNVTFPNKMTVRVDQERREQGEVKL CCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCCCCEEEEECHHHHCCCCEEE IKAFDTHRAQT EEEHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]