| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is 51596695
Identifier: 51596695
GI number: 51596695
Start: 2793979
End: 2795142
Strand: Reverse
Name: 51596695
Synonym: YPTB2371
Alternate gene names: NA
Gene position: 2795142-2793979 (Counterclockwise)
Preceding gene: 51596696
Following gene: 51596694
Centisome position: 58.91
GC content: 46.22
Gene sequence:
>1164_bases ATGAGTGCTTATTTCTATAGGGTGAAAACAGTGATTCGGCATATCAACATGTACCTGCGCGTTTATGCTCATGTCCGTTC TGTTGCTACGCTACTGATATTGGTCGTTGTGGCTGGGGGGCCAAGCAGTAAAGTGTGGGCTGAAGGCCTCGGGATAAATT GTGACTATACTGGCAGTATTTATATCAATCCCCCTACCAGTATTATTCGTGTTAAGCCTAATGCGGCCATAGGTGATCCT ATTGGTTCATGGATGACCATCAGTGCACCTGAAGTTTGGTCATGCGCGCTATTACCCGCTTACCAGTCCCGGGATGTGCG GGCTGGGATTTTGGTATTTTCACCTTATAATCCATTGCTTACGACCAATATTGATGGTGGTAATTACAAAGTTTTCCGCA CTGGCGATACTAATCCTGGCTTGGGAATTGCCGTACGTTTTCGTGCTATCGGGGCCGGTTTTAGCAGCGATTGGACCCAA CTAGAGGGTTTTGGGCTCGTAGACGGCACGGTGAGTGCCCCATTAATAGGACCGATTCCTTATAATGATGGGATTAAATT TCCCTTAGGAATGGAAATGCAAATTCACTATGTGAAGGCGAGTGAGGAGCTAAGATCGGGTGGCGTAAGGATATTTGATT TTGCTTATCTTTACCATCGGCGCTCCATTGATGGTGTGCCGGATAATAGTGGTGCTCGCTACAGGATTGTTCAGGTCCCG GCAAATAGCATTGATATTCAGATAATGACGCAAACCTGTACCACGCCTGATGTGGTCGTGAATCTACCTGAGGTCAATTC GCGGCAGTTTACCGGCATTGGTACGGTGAAAGCACTTAAAGCTTTTAATCTGAATTTTAATCATTGCCCAGGTGGACTAG ACGGTATTAATTATAAATTTGGTGCGACGACGAGTATTCTGGATTCGGCTAATGGTGTTGTTGCGTTGGATGCCAACTCG ACTGCTGAGGGGGTGGGGGTATTACTGCGCAGCCAATCAGATGCGGCGATTGAATTGGATAAGGAATACACGATGAGTGG TTATGACACCAGTAGCACACAAAGTTACACGGTCCCCATGCAGGCGGGAATTTACCAAATAGAAAACACCGTGACACCTG GTTCAGTAAAAGGTGAGTTCACATTTACGTTGATCTATAAATGA
Upstream 100 bases:
>100_bases TCGGTGAGAGTTGCAGTTTTGACTATAAATTGCCGGAAGGTAACCTAGTAAAAGGTCATCTAGTCAAAGGTGACTACCGG CGCTTAGAGGTGATATGCAA
Downstream 100 bases:
>100_bases AAACGTTATGGCTAATCCTCAGGCCGCGTGCCCGTAAGGTGAATAATCTGCGTACTTTACTGATTACGGCTATTTTAAGC AGTTTGGTGTTGAGTGCTAC
Product: fimbrial protein
Products: NA
Alternate protein names: Fimbrial Componenet; Type-1 Fimbrial Protein A Subunit
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MSAYFYRVKTVIRHINMYLRVYAHVRSVATLLILVVVAGGPSSKVWAEGLGINCDYTGSIYINPPTSIIRVKPNAAIGDP IGSWMTISAPEVWSCALLPAYQSRDVRAGILVFSPYNPLLTTNIDGGNYKVFRTGDTNPGLGIAVRFRAIGAGFSSDWTQ LEGFGLVDGTVSAPLIGPIPYNDGIKFPLGMEMQIHYVKASEELRSGGVRIFDFAYLYHRRSIDGVPDNSGARYRIVQVP ANSIDIQIMTQTCTTPDVVVNLPEVNSRQFTGIGTVKALKAFNLNFNHCPGGLDGINYKFGATTSILDSANGVVALDANS TAEGVGVLLRSQSDAAIELDKEYTMSGYDTSSTQSYTVPMQAGIYQIENTVTPGSVKGEFTFTLIYK
Sequences:
>Translated_387_residues MSAYFYRVKTVIRHINMYLRVYAHVRSVATLLILVVVAGGPSSKVWAEGLGINCDYTGSIYINPPTSIIRVKPNAAIGDP IGSWMTISAPEVWSCALLPAYQSRDVRAGILVFSPYNPLLTTNIDGGNYKVFRTGDTNPGLGIAVRFRAIGAGFSSDWTQ LEGFGLVDGTVSAPLIGPIPYNDGIKFPLGMEMQIHYVKASEELRSGGVRIFDFAYLYHRRSIDGVPDNSGARYRIVQVP ANSIDIQIMTQTCTTPDVVVNLPEVNSRQFTGIGTVKALKAFNLNFNHCPGGLDGINYKFGATTSILDSANGVVALDANS TAEGVGVLLRSQSDAAIELDKEYTMSGYDTSSTQSYTVPMQAGIYQIENTVTPGSVKGEFTFTLIYK >Mature_386_residues SAYFYRVKTVIRHINMYLRVYAHVRSVATLLILVVVAGGPSSKVWAEGLGINCDYTGSIYINPPTSIIRVKPNAAIGDPI GSWMTISAPEVWSCALLPAYQSRDVRAGILVFSPYNPLLTTNIDGGNYKVFRTGDTNPGLGIAVRFRAIGAGFSSDWTQL EGFGLVDGTVSAPLIGPIPYNDGIKFPLGMEMQIHYVKASEELRSGGVRIFDFAYLYHRRSIDGVPDNSGARYRIVQVPA NSIDIQIMTQTCTTPDVVVNLPEVNSRQFTGIGTVKALKAFNLNFNHCPGGLDGINYKFGATTSILDSANGVVALDANST AEGVGVLLRSQSDAAIELDKEYTMSGYDTSSTQSYTVPMQAGIYQIENTVTPGSVKGEFTFTLIYK
Specific function: Unknown
COG id: COG3539
COG function: function code NU; P pilus assembly protein, pilin FimA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41918; Mature: 41787
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAYFYRVKTVIRHINMYLRVYAHVRSVATLLILVVVAGGPSSKVWAEGLGINCDYTGSI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHCCCCCCCEECEEE YINPPTSIIRVKPNAAIGDPIGSWMTISAPEVWSCALLPAYQSRDVRAGILVFSPYNPLL EECCCCEEEEECCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCEE TTNIDGGNYKVFRTGDTNPGLGIAVRFRAIGAGFSSDWTQLEGFGLVDGTVSAPLIGPIP EEEECCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEECCCEEECCCCCCCEEECCC YNDGIKFPLGMEMQIHYVKASEELRSGGVRIFDFAYLYHRRSIDGVPDNSGARYRIVQVP CCCCCCCCCCCEEEEEEEECCHHHHHCCEEEEEEEEEHHHCCCCCCCCCCCCEEEEEEEC ANSIDIQIMTQTCTTPDVVVNLPEVNSRQFTGIGTVKALKAFNLNFNHCPGGLDGINYKF CCCEEEEEEEECCCCCCEEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCEEC GATTSILDSANGVVALDANSTAEGVGVLLRSQSDAAIELDKEYTMSGYDTSSTQSYTVPM CCCHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEECCCCCCCCCEEEEEH QAGIYQIENTVTPGSVKGEFTFTLIYK HCCEEEEECCCCCCCCCCEEEEEEEEC >Mature Secondary Structure SAYFYRVKTVIRHINMYLRVYAHVRSVATLLILVVVAGGPSSKVWAEGLGINCDYTGSI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHCCCCCCCEECEEE YINPPTSIIRVKPNAAIGDPIGSWMTISAPEVWSCALLPAYQSRDVRAGILVFSPYNPLL EECCCCEEEEECCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCEE TTNIDGGNYKVFRTGDTNPGLGIAVRFRAIGAGFSSDWTQLEGFGLVDGTVSAPLIGPIP EEEECCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEECCCEEECCCCCCCEEECCC YNDGIKFPLGMEMQIHYVKASEELRSGGVRIFDFAYLYHRRSIDGVPDNSGARYRIVQVP CCCCCCCCCCCEEEEEEEECCHHHHHCCEEEEEEEEEHHHCCCCCCCCCCCCEEEEEEEC ANSIDIQIMTQTCTTPDVVVNLPEVNSRQFTGIGTVKALKAFNLNFNHCPGGLDGINYKF CCCEEEEEEEECCCCCCEEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCEEC GATTSILDSANGVVALDANSTAEGVGVLLRSQSDAAIELDKEYTMSGYDTSSTQSYTVPM CCCHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEECCCCCCCCCEEEEEH QAGIYQIENTVTPGSVKGEFTFTLIYK HCCEEEEECCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA