| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is pheT
Identifier: 51596660
GI number: 51596660
Start: 2758080
End: 2760467
Strand: Reverse
Name: pheT
Synonym: YPTB2336
Alternate gene names: 51596660
Gene position: 2760467-2758080 (Counterclockwise)
Preceding gene: 51596661
Following gene: 51596659
Centisome position: 58.18
GC content: 48.37
Gene sequence:
>2388_bases ATGAAATTCAGTGAACTTTGGTTACGCGAATGGGTAAATCCAGCCATTAGCAGCGATGATTTAGCTCATCAGATTACCAT GGCCGGGCTAGAGGTTGATGGTGTAGACGCGGTTGCCGGTGAGTTTAACGGCGTTGTTGTGGGTCATGTCGTGGAGTGTG GGCAACATCCAAATGCAGATAAGCTGCGAGTGACCAAAATTGATGTCGGCGGTGATCGCCTCCTAGACATCGTTTGTGGT GCACCTAATTGCCGTCAAGGCCTCAAAGTTGCAGTTGCAACGGTAGGGGCGGTATTACCGGGTGACTTTAAAATTAAAGC CGCCAAACTGCGTGGTGAGTCTTCAGAAGGGATGCTGTGCTCTTTTTCTGAGCTGGCTATTTCAGACGATCATGATGGTA TTATTGAATTGCCCGCAGATGCTCCCATTGGTGTCGATGTGCGTGAGTATTTGCACTTGGACGACAAGACGATTGAAATC AGCGTAACGCCAAACCGTGCTGATTGTTTAGGGATTATTGGTGTCGCTCGTGATGTAGCTGTCGTTAATCAATTGCCATT AACTGAACCGGATATGGCTGAAGTTGTGGCATCAATTAATGACACACTTCCTATTCGTGTCGATGCACCACAAGCTTGCC CACGTTATCTGGGACGTGTGGTGAAGGGAATTAATGTTAAGGCTGCGACACCCCTATGGATGCGTGAAAAATTGCGCCGT TGTGGCATTCGTTCAATTGATCCTGTTGTCGATGTGACCAACTTTGTGTTGCTGGAGCTAGGGCAGCCAATGCATGCCTT TGATCTGGATCGTATCAGTGGCGGGGTCATCGTTCGTCTGGCAACTGAAGGCGAAGAACTCACGCTATTAGATGGTACAA AAGTCAAGTTGAACGCAGACACACTGGTTATTGCCGATCATCAGAAACCATTGGCGATGGCGGGTATCTTTGGTGGCGAA CATTCTGGTGTCAATGAAGAAACCAGAAATGTATTGCTGGAGTCCGCGTTCTTCAATCCACTGTCTATTACTGGCCGAGC ACGCCGCCATGGCTTACATACTGATGCCTCTCATCGTTATGAGCGTGGTGTCGACCCAGCGTTACAGCATAAAGCTATCG AACGTGCGACACGTCTACTGATTGATATTTGTGGTGGGGAAGCCGGGCCGGTTGTGGATGTGACGACAGCATCAGAACTA CCCAAACAAGCCACTATCACATTGCGCCGTGAGAAGCTGGATCGCCTAATTGGTCATCATATTCCATCTGAACAGGTGAG TGATATTTTGCGTCGCTTAGGATGCAAAGTGACTGAATGTGGTTCTGATTGGCAGGCTGTAGCACCGAGCTGGCGTTTCG ATATGGCTATCGAAGAAGACCTGGTGGAAGAAGTCGCCCGTATTTATGGCTATAACAATATTCCAGATGTCCCCGTTAGA GCTGATTTGGTAATGACTAAACACCGTGAAGCAAGCTTGTCGCTGAAGCGGGTAAAGACAGCTTTGGTGGATCGTGGTTA TCAGGAAGCAATTACTTACAGTTTTGTTGATCCTAAAGTACAGGCGTTACTGCATCCACAACAGGAAGCCCTCATTTTAC CAAACCCTATTTCAGTTGATATGTCCGCAATGCGTTTATCACTGCTAACGGGTTTGCTGTCGGCAGTCGTTTATAATCAG AACCGTCAGCAATCTCGGCTGCGATTATTCGAAAGCGGTTTACGCTTTGTTCCTGATAATACGGCAGATTTAGGCATTAG GCAGGATGTAATGCTGGCAGGTGTTATTGCTGGTCATCGTTACGATGAGCATTGGGATCTGGCGCGTCAGCCGATCGACT TCTATGATTTGAAAGGTGATTTGGAAGCAATTCTGGAGCTTACCGGCAAATTATCTGATGTTCAGTTCCGGGCAGAAGCG CATTCTGCTCTGCACCCTGGGCAGAGTGCTGCAATTTATTTAGCGGGTGAACACATTGGTTTCATTGGTGTAGTTCACCC AGAATTGGAACGTAAGCTGGATCTGAATGGTCGAACTGTCGTGTTTGAAGTGCAGTGGAATAAGCTTGCAGACCGCGCTG TGCCTCAGGCCAGAGAGATTTCTCGCTTCCCGGCGAACCGTCGTGATATCGCTGTTGTGGTGGCTGAAAACGTTCCCGCA GAAGATATTTTGGCCGAGTGTAAGAAAGTTGGCGCAAATCAGGTAGTTGGCGTAAACTTGTTTGATGTGTACCGTGGCAA GGGCGTAGCAGAGGGCTATAAGAGTCTGGCTATTAGTCTGGTGTTGCAGGATACCGCCCGTACACTGGAAGAAGAGGAGA TCGCCGCTACCGTTGCAAAATGCGTAGAGGCATTAAAACAGCGATTCCAAGCATCCTTGAGGGATTGA
Upstream 100 bases:
>100_bases GAACGTTTAACGATGTTACGTTACGGCGTCACCGATTTGCGTGCATTTTTCGAAAACGATCTGCGTTTCCTCAAACAGTT TAAGTAAGGCAGGATATCTC
Downstream 100 bases:
>100_bases ACCTATGGCGCTTACTAAAGCTGAAATGTCAGAACATCTGTTTGAAAAGCTAGGGCTTAGCAAACGAGATGCTAAAGATC TGGTTGAGTTATTCTTCGAA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MKFSELWLREWVNPAISSDDLAHQITMAGLEVDGVDAVAGEFNGVVVGHVVECGQHPNADKLRVTKIDVGGDRLLDIVCG APNCRQGLKVAVATVGAVLPGDFKIKAAKLRGESSEGMLCSFSELAISDDHDGIIELPADAPIGVDVREYLHLDDKTIEI SVTPNRADCLGIIGVARDVAVVNQLPLTEPDMAEVVASINDTLPIRVDAPQACPRYLGRVVKGINVKAATPLWMREKLRR CGIRSIDPVVDVTNFVLLELGQPMHAFDLDRISGGVIVRLATEGEELTLLDGTKVKLNADTLVIADHQKPLAMAGIFGGE HSGVNEETRNVLLESAFFNPLSITGRARRHGLHTDASHRYERGVDPALQHKAIERATRLLIDICGGEAGPVVDVTTASEL PKQATITLRREKLDRLIGHHIPSEQVSDILRRLGCKVTECGSDWQAVAPSWRFDMAIEEDLVEEVARIYGYNNIPDVPVR ADLVMTKHREASLSLKRVKTALVDRGYQEAITYSFVDPKVQALLHPQQEALILPNPISVDMSAMRLSLLTGLLSAVVYNQ NRQQSRLRLFESGLRFVPDNTADLGIRQDVMLAGVIAGHRYDEHWDLARQPIDFYDLKGDLEAILELTGKLSDVQFRAEA HSALHPGQSAAIYLAGEHIGFIGVVHPELERKLDLNGRTVVFEVQWNKLADRAVPQAREISRFPANRRDIAVVVAENVPA EDILAECKKVGANQVVGVNLFDVYRGKGVAEGYKSLAISLVLQDTARTLEEEEIAATVAKCVEALKQRFQASLRD
Sequences:
>Translated_795_residues MKFSELWLREWVNPAISSDDLAHQITMAGLEVDGVDAVAGEFNGVVVGHVVECGQHPNADKLRVTKIDVGGDRLLDIVCG APNCRQGLKVAVATVGAVLPGDFKIKAAKLRGESSEGMLCSFSELAISDDHDGIIELPADAPIGVDVREYLHLDDKTIEI SVTPNRADCLGIIGVARDVAVVNQLPLTEPDMAEVVASINDTLPIRVDAPQACPRYLGRVVKGINVKAATPLWMREKLRR CGIRSIDPVVDVTNFVLLELGQPMHAFDLDRISGGVIVRLATEGEELTLLDGTKVKLNADTLVIADHQKPLAMAGIFGGE HSGVNEETRNVLLESAFFNPLSITGRARRHGLHTDASHRYERGVDPALQHKAIERATRLLIDICGGEAGPVVDVTTASEL PKQATITLRREKLDRLIGHHIPSEQVSDILRRLGCKVTECGSDWQAVAPSWRFDMAIEEDLVEEVARIYGYNNIPDVPVR ADLVMTKHREASLSLKRVKTALVDRGYQEAITYSFVDPKVQALLHPQQEALILPNPISVDMSAMRLSLLTGLLSAVVYNQ NRQQSRLRLFESGLRFVPDNTADLGIRQDVMLAGVIAGHRYDEHWDLARQPIDFYDLKGDLEAILELTGKLSDVQFRAEA HSALHPGQSAAIYLAGEHIGFIGVVHPELERKLDLNGRTVVFEVQWNKLADRAVPQAREISRFPANRRDIAVVVAENVPA EDILAECKKVGANQVVGVNLFDVYRGKGVAEGYKSLAISLVLQDTARTLEEEEIAATVAKCVEALKQRFQASLRD >Mature_795_residues MKFSELWLREWVNPAISSDDLAHQITMAGLEVDGVDAVAGEFNGVVVGHVVECGQHPNADKLRVTKIDVGGDRLLDIVCG APNCRQGLKVAVATVGAVLPGDFKIKAAKLRGESSEGMLCSFSELAISDDHDGIIELPADAPIGVDVREYLHLDDKTIEI SVTPNRADCLGIIGVARDVAVVNQLPLTEPDMAEVVASINDTLPIRVDAPQACPRYLGRVVKGINVKAATPLWMREKLRR CGIRSIDPVVDVTNFVLLELGQPMHAFDLDRISGGVIVRLATEGEELTLLDGTKVKLNADTLVIADHQKPLAMAGIFGGE HSGVNEETRNVLLESAFFNPLSITGRARRHGLHTDASHRYERGVDPALQHKAIERATRLLIDICGGEAGPVVDVTTASEL PKQATITLRREKLDRLIGHHIPSEQVSDILRRLGCKVTECGSDWQAVAPSWRFDMAIEEDLVEEVARIYGYNNIPDVPVR ADLVMTKHREASLSLKRVKTALVDRGYQEAITYSFVDPKVQALLHPQQEALILPNPISVDMSAMRLSLLTGLLSAVVYNQ NRQQSRLRLFESGLRFVPDNTADLGIRQDVMLAGVIAGHRYDEHWDLARQPIDFYDLKGDLEAILELTGKLSDVQFRAEA HSALHPGQSAAIYLAGEHIGFIGVVHPELERKLDLNGRTVVFEVQWNKLADRAVPQAREISRFPANRRDIAVVVAENVPA EDILAECKKVGANQVVGVNLFDVYRGKGVAEGYKSLAISLVLQDTARTLEEEEIAATVAKCVEALKQRFQASLRD
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=384, Percent_Identity=22.3958333333333, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1788006, Length=795, Percent_Identity=83.5220125786164, Blast_Score=1347, Evalue=0.0, Organism=Drosophila melanogaster, GI21355211, Length=383, Percent_Identity=22.4543080939948, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 87142; Mature: 87142
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSELWLREWVNPAISSDDLAHQITMAGLEVDGVDAVAGEFNGVVVGHVVECGQHPNAD CCHHHHHHHHHCCCCCCCCHHHHHHEEECCEECCCHHHHCCCCCEEEEEHHHCCCCCCCC KLRVTKIDVGGDRLLDIVCGAPNCRQGLKVAVATVGAVLPGDFKIKAAKLRGESSEGMLC CEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEE SFSELAISDDHDGIIELPADAPIGVDVREYLHLDDKTIEISVTPNRADCLGIIGVARDVA EHHHHEECCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH VVNQLPLTEPDMAEVVASINDTLPIRVDAPQACPRYLGRVVKGINVKAATPLWMREKLRR HHHCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH CGIRSIDPVVDVTNFVLLELGQPMHAFDLDRISGGVIVRLATEGEELTLLDGTKVKLNAD CCCCCCCHHHHHHHHHHHHCCCCCHHHCHHHCCCCEEEEEECCCCEEEEECCCEEEECCC TLVIADHQKPLAMAGIFGGEHSGVNEETRNVLLESAFFNPLSITGRARRHGLHTDASHRY EEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCHHHH ERGVDPALQHKAIERATRLLIDICGGEAGPVVDVTTASELPKQATITLRREKLDRLIGHH HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCHHEEEEHHHHHHHHHHCC IPSEQVSDILRRLGCKVTECGSDWQAVAPSWRFDMAIEEDLVEEVARIYGYNNIPDVPVR CCHHHHHHHHHHHCCEEEECCCCCHHCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCE ADLVMTKHREASLSLKRVKTALVDRGYQEAITYSFVDPKVQALLHPQQEALILPNPISVD EEEEEECCCHHHHHHHHHHHHHHHCCHHHHHEEEECCHHHHHHHCCCCCEEECCCCCCCC MSAMRLSLLTGLLSAVVYNQNRQQSRLRLFESGLRFVPDNTADLGIRQDVMLAGVIAGHR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC YDEHWDLARQPIDFYDLKGDLEAILELTGKLSDVQFRAEAHSALHPGQSAAIYLAGEHIG CCCCHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCEEEEEECCCEE FIGVVHPELERKLDLNGRTVVFEVQWNKLADRAVPQAREISRFPANRRDIAVVVAENVPA EEEEECHHHHHHCCCCCCEEEEEEECCHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCH EDILAECKKVGANQVVGVNLFDVYRGKGVAEGYKSLAISLVLQDTARTLEEEEIAATVAK HHHHHHHHHCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHH CVEALKQRFQASLRD HHHHHHHHHHHHCCC >Mature Secondary Structure MKFSELWLREWVNPAISSDDLAHQITMAGLEVDGVDAVAGEFNGVVVGHVVECGQHPNAD CCHHHHHHHHHCCCCCCCCHHHHHHEEECCEECCCHHHHCCCCCEEEEEHHHCCCCCCCC KLRVTKIDVGGDRLLDIVCGAPNCRQGLKVAVATVGAVLPGDFKIKAAKLRGESSEGMLC CEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEE SFSELAISDDHDGIIELPADAPIGVDVREYLHLDDKTIEISVTPNRADCLGIIGVARDVA EHHHHEECCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH VVNQLPLTEPDMAEVVASINDTLPIRVDAPQACPRYLGRVVKGINVKAATPLWMREKLRR HHHCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH CGIRSIDPVVDVTNFVLLELGQPMHAFDLDRISGGVIVRLATEGEELTLLDGTKVKLNAD CCCCCCCHHHHHHHHHHHHCCCCCHHHCHHHCCCCEEEEEECCCCEEEEECCCEEEECCC TLVIADHQKPLAMAGIFGGEHSGVNEETRNVLLESAFFNPLSITGRARRHGLHTDASHRY EEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCHHHH ERGVDPALQHKAIERATRLLIDICGGEAGPVVDVTTASELPKQATITLRREKLDRLIGHH HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCHHEEEEHHHHHHHHHHCC IPSEQVSDILRRLGCKVTECGSDWQAVAPSWRFDMAIEEDLVEEVARIYGYNNIPDVPVR CCHHHHHHHHHHHCCEEEECCCCCHHCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCE ADLVMTKHREASLSLKRVKTALVDRGYQEAITYSFVDPKVQALLHPQQEALILPNPISVD EEEEEECCCHHHHHHHHHHHHHHHCCHHHHHEEEECCHHHHHHHCCCCCEEECCCCCCCC MSAMRLSLLTGLLSAVVYNQNRQQSRLRLFESGLRFVPDNTADLGIRQDVMLAGVIAGHR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC YDEHWDLARQPIDFYDLKGDLEAILELTGKLSDVQFRAEAHSALHPGQSAAIYLAGEHIG CCCCHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCEEEEEECCCEE FIGVVHPELERKLDLNGRTVVFEVQWNKLADRAVPQAREISRFPANRRDIAVVVAENVPA EEEEECHHHHHHCCCCCCEEEEEEECCHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCH EDILAECKKVGANQVVGVNLFDVYRGKGVAEGYKSLAISLVLQDTARTLEEEEIAATVAK HHHHHHHHHCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHH CVEALKQRFQASLRD HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]