Click here to switch to the map view.

The map label for this gene is ydiK [H]

Identifier: 51596641

GI number: 51596641

Start: 2736496

End: 2737599

Strand: Direct

Name: ydiK [H]

Synonym: YPTB2317

Alternate gene names: 51596641

Gene position: 2736496-2737599 (Clockwise)

Preceding gene: 51596631

Following gene: 51596643

Centisome position: 57.68

GC content: 48.01

Gene sequence:

>1104_bases
ATGAATGACCCGCAACAACGTCTTCTCGATTTACCTAAACTGATGTTTGGGGTGATATTCATTATGGGAATGATTATCGC
CAGTTTTTGGGTAATACAGCCTTTTGTCATGGGCTTTGCCTGGGCTGGTATGGTGGTCATTGCGACCTGGCCGCTGTTAA
TCCGATTGGAGAAACTTCTTTGGGGCAGGCGTTCACTGGCCGTTGTTGTCATGACGATATTGCTCATTTTACTGTTTGTT
ATTCCTATCGCGCTGTTGGTCAGTAGTTTGGTTGAAAACAGCGCCCCACTGATCCAATGGGCATCCAGCCCATCAAATCT
GCGTATGCCCAATGTGGATTGGATGAAATCGATTCCATTGATAGGCGATAAACTTTATAGCAGTTGGAATACCTTAATTT
CTGGTGGCGCTAACGCTTTAATGGCTAAAGTACAGCCCTACATTGGTGCCACCGCCACCTGGTTTGTGGCACAAGCAGCA
CATGTTGGCTATTTTCTGATTCATCTGGCCTTGATGGTGCTCTTTAGCGTTTTGCTCTATATCCATGGTGAGCAAGTCGC
CTTAGGTATCCGTCATTTTGCCATGCGCGCTGCCGATAAGCGTGGCGATGCCGTAGTCGTGATGGCGGCGAAAGCGATTC
GTGCTGTTGCGTTGGGTGTTGTGGTCACCGCATTAGTACAAGCCATACTCGGAGGGATAGGTCTTGCTATCGCGGGTATT
CAATATGCCACCCTATTGACGGTATTAATGTTCATCTGTTGTGTTGCGCAACTCGGTCCATTACTGGTGCTGGTACCTGC
GGTCATATGGGTGTATTGGACGGGTGATACGACGTGGGGAACAATACTCTTGGTCTGGAGCTGTATCGTTGGAACATTAG
ATAACTTCTTGCGCCCATATCTGATCCGTATGGAAGCAGATATGCCAATGATTCTGATCCTCTCCGGGGTGATCGGGGGG
TTGTTATCCTTTGGTATGATTGGTCTATTTATCGGGCCAGTGGTGTTGGCTATCTCATATCGTCTGATTTCAGCCTGGGT
TCACGAAACGCCAGAACCCGAAGAGAGTGTTACCGATGCCGCTAAGCATTTAGAAGAGCTTTAA

Upstream 100 bases:

>100_bases
AACGGTTCTAACGCAATAACGGATATAACGCAATAACGGATATAACGCAATAATAGTGCAATGGCCACTTTGCCATGATT
ATCGAAATGAGAGTTCACTA

Downstream 100 bases:

>100_bases
CCCTAAGGGGTTTGGTGGTTATTCTGCCGAACCCCTTATATTCAGCATATATTCTCGATTACTAATAATCCTCGATTTTT
TATACCCCATTAATTTATTA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MNDPQQRLLDLPKLMFGVIFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFV
IPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGANALMAKVQPYIGATATWFVAQAA
HVGYFLIHLALMVLFSVLLYIHGEQVALGIRHFAMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGI
QYATLLTVLMFICCVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTLDNFLRPYLIRMEADMPMILILSGVIGG
LLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTDAAKHLEEL

Sequences:

>Translated_367_residues
MNDPQQRLLDLPKLMFGVIFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFV
IPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGANALMAKVQPYIGATATWFVAQAA
HVGYFLIHLALMVLFSVLLYIHGEQVALGIRHFAMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGI
QYATLLTVLMFICCVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTLDNFLRPYLIRMEADMPMILILSGVIGG
LLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTDAAKHLEEL
>Mature_367_residues
MNDPQQRLLDLPKLMFGVIFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFV
IPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGANALMAKVQPYIGATATWFVAQAA
HVGYFLIHLALMVLFSVLLYIHGEQVALGIRHFAMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGI
QYATLLTVLMFICCVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTLDNFLRPYLIRMEADMPMILILSGVIGG
LLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTDAAKHLEEL

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=356, Percent_Identity=64.3258426966292, Blast_Score=468, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40076; Mature: 40076

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDPQQRLLDLPKLMFGVIFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGRRSLAVVVMTILLILLFVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCH
IGDKLYSSWNTLISGGANALMAKVQPYIGATATWFVAQAAHVGYFLIHLALMVLFSVLLY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHGEQVALGIRHFAMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGI
HCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYATLLTVLMFICCVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTLDNFLRPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTDA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AKHLEEL
HHHHHCC
>Mature Secondary Structure
MNDPQQRLLDLPKLMFGVIFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGRRSLAVVVMTILLILLFVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCH
IGDKLYSSWNTLISGGANALMAKVQPYIGATATWFVAQAAHVGYFLIHLALMVLFSVLLY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHGEQVALGIRHFAMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGI
HCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYATLLTVLMFICCVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTLDNFLRPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTDA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AKHLEEL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]