| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is ydbH [H]
Identifier: 51596571
GI number: 51596571
Start: 2652747
End: 2655443
Strand: Reverse
Name: ydbH [H]
Synonym: YPTB2247
Alternate gene names: 51596571
Gene position: 2655443-2652747 (Counterclockwise)
Preceding gene: 51596574
Following gene: 51596570
Centisome position: 55.97
GC content: 50.2
Gene sequence:
>2697_bases ATGGCTAAATGCGCAAAAATAGTAGTCGGGTTGTTATTAATAAGCGCACTGTCGCTGCTCGTGTTATGGAAAACTCTGCC GACATGGTTACCGAGAGTCGCCGGGTATTGGTTACCTGCGGGTAGCCAACTGCAATTACCCGTTCTTCCTGTGTGGCGTA ATGGCGCGTTGCGTGTCGAGCAACTGCGTTATTTGGCTCAGGATTGTACGCTCGCTAATATCAGTCAACTGAGTATAGGT TATCACCAAGGACGCTGGCAGTTGGGTGCGGGTGATGTGGTGCTGGAGACTGCTTGTTTGAGTCAGTTACCGTCTGGCGG TGATAGCTCTCCGCTCGATTTGGCGCAATGGCAGCAGCAACTGTCCCGTTTTGATCTTACTATCAATCATCTGCTGGTCA CCCCTTGGCAGCAATATGCAGGCAAGCTGACACTGACATCACCTGACAACAATAAATCTCTTCAGACACTCGGTTATCAG GGGCAGCAACTCAGCTTTGCTGTGACGTTGAATGAACAACAGCAGCTTAGTTTGAATCAGTTCTCTATGGCCATTCCCGG TATGCCTCAACTGTTTCAGCTTAGCGGTAAAATTAAAATCCCGTTGTCATTGGATGAGTGGCCAGAGCAAGGCGCATTAG ATGGGCTATTGACCACCGGTTATTTGTCGAAGCCGCTGCTATTGAACTTGAGTTGGCAGCAACAGCAGGGCGTATTGACC TTAACTGAGCGTGGCGATAACCAACCTTTAGCGCGTTTACCCTGGCAAGCCTCGGCGAATCTTATTCAGATCGTGAACGG TCAGTGGCAATGGCCATATGGTCAACAGCCGTTGAAGGGGGGCGTTAACCTGACACTACACGATTGGGATCAAGGATTGG AACAGACCTCGATTGATGCACGGATTAACGTGATTACCTCGGGGAAAAATGGCAAAGGGAACGCCGTATTGACGCTGGGG CCGGGCAATTTGGGTTTAATTAACAGTGAGTTAAAATTCCAACTAAGTGGGCAAGTAAATCTGGAAACCATGGTGTTTAA CGCCACGATCCCCGGTTTACTTAGCGGTTCAGTATTGAATCCGACGTGGATATTGTCCCCCGGCGCCTTGCTGCGTACTT ATGGTAATCTGACCCCGGAATTGCGGATAAAAGATGCTCGTTGGCCGCTGGCGGGTATCCGGGTGACCGCCGCGGGTGTT ACGGGGCGTTTACAGGCAATCGTTGATGCTCAGGATAGCTACTGGGGGAGTGTCAATCTGCATCTGGATGGGCAGGCACA AGCGTTTTGGCCAGATAAGGGCAATTGGCAATGGCGCTATTGGGGGAGCGGAAACTTGCCACCATTAGCGGCACGCTGGG ATGTGGGAGGGACGGGGAGTTGGCGGGATACGCTGATTACGGTGGATACGCTGTCAACGGGGTTTGATCGTTTACAATAT GGCCTAGTCAAGGTGGACGCACCACGTTTGATATTGACGAAACCGCTGACCTGGCAACGAGATAACCACCACCCCGCGTT TATTGCAGGTCTGAAACTGAGCGCTAAAAAAGTGGAGTTCAGTGATGGTGGCGGTTATCTCCCCCCGTCAGTGTTATCAC TGCAATTCAATGGCCGCGATCTCGATAGTTTCCTCTGGCAAGGGCAATTGCAAGCTCAGTCTATCGGGCCAATTCCGCTA CGTGGCCGCTGGGATGGTGAGCGCTTGCGTGGTGAGGGTTGGTGGCCTAAGCAGTCATTAATGGTCTTCCAGCCACTGAT TTCAAAAGATCTGGGGATCAAACTGCGGGACGGTACGTTTTATGCGCAAGCCGCATTCTCTGCGGCGCGTGAACAAGGGT TTACTGCCGGTGGGCATTGGGTGGTAAACAATGGCGGCATGTGGTTGCAGGACGGTGAGTTAAGCGGGCTAGATTTTGTC ATGTCGTATCGTTTACAGAACCATCACTGGCAGTTAGGGGCTAAAGAGCCGGTAATGCTACGTATCGCTTCGTTGAATAA CCTCTTTGATATGCAGAATATTACTGCTGATTTACAGGGGACTTATCCTTATTCAGAAACGGCACCACTAACATTAAGCA ATGTTGGCATGGATATTTTGAACGGCCACCTGAGCTTGTCTGCGCTGCGTTTGCCACAACATGATGCCGCCGTCCTCAAA TTAAGTCAGATTGATCTGAGCGCGTTGTTCACCGTATTACAACCGAAGCAATTTGCGATGTCGGGTAAAGTGAACGGCGA ATTACCGCTTTATCTTAATAACCCACAGTGGCTGGTGCGTAATGGTTGGATTGCCAATGACGGCATGCTGACATTACGGC TCGATAAAGACCTGACCGATTCTATCAGTGAGAGCAATACTGTCGCCGGTGCGGCGATTGACTGGTTGCGTTACATGGAG ATTTCTCAATCGTATACCAAAGTGGATCTGGATAATCTGGGGCAGTTGACGCTAACCTCTAAAGTTCATGGTGTGAATTC GCAAAAAAATAGCACACGGGCGGTAGTACTGAATTACCAGCACAAGGAGAACCTGTTCCAACTTTGGCGCAGCCTACGAT TTGGTGACAATTTACAAGAGTGGTTGCAACAGACTATTTCATTACCATCAGCGAGTTCATTACCGTCCGCGAGTTCATTA CCGCAAGGCATTTCATCACAACCAACAGCACCAATACCGACGAGGGCGAAGGAATGA
Upstream 100 bases:
>100_bases CTTGCCGCAATGTAGGGCTCAGTTATTGTAGGTCTTGGTGGTTTTTGGGCGCAGTGATTGAAGCACTCAGTGTCAGGTTG GTGATAAAACAAGGCAAGTC
Downstream 100 bases:
>100_bases AGATTTTGACAGGGGAGCGTGTGGCGATGGCTCTGGGTATTTTACTGCTCAGTGGCTGTGTCCGTCTTGAGGTAGCGACA CCAGAGAAACCTATCACGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MAKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVEQLRYLAQDCTLANISQLSIG YHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQLSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQ GQQLSFAVTLNEQQQLSLNQFSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDARINVITSGKNGKGNAVLTLG PGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLNPTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGV TGRLQAIVDAQDSYWGSVNLHLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRDLDSFLWQGQLQAQSIGPIPL RGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTFYAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFV MSYRLQNHHWQLGAKEPVMLRIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTDSISESNTVAGAAIDWLRYME ISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVVLNYQHKENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSL PQGISSQPTAPIPTRAKE
Sequences:
>Translated_898_residues MAKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVEQLRYLAQDCTLANISQLSIG YHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQLSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQ GQQLSFAVTLNEQQQLSLNQFSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDARINVITSGKNGKGNAVLTLG PGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLNPTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGV TGRLQAIVDAQDSYWGSVNLHLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRDLDSFLWQGQLQAQSIGPIPL RGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTFYAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFV MSYRLQNHHWQLGAKEPVMLRIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTDSISESNTVAGAAIDWLRYME ISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVVLNYQHKENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSL PQGISSQPTAPIPTRAKE >Mature_897_residues AKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVEQLRYLAQDCTLANISQLSIGY HQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQLSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQG QQLSFAVTLNEQQQLSLNQFSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLTL TERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDARINVITSGKNGKGNAVLTLGP GNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLNPTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGVT GRLQAIVDAQDSYWGSVNLHLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQYG LVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRDLDSFLWQGQLQAQSIGPIPLR GRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTFYAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFVM SYRLQNHHWQLGAKEPVMLRIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLKL SQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTDSISESNTVAGAAIDWLRYMEI SQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVVLNYQHKENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSLP QGISSQPTAPIPTRAKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787646, Length=866, Percent_Identity=46.0739030023095, Blast_Score=773, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021730 [H]
Pfam domain/function: PF11739 DctA-YdbH [H]
EC number: NA
Molecular weight: Translated: 99188; Mature: 99057
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEEEECCCCCEEHH QLRYLAQDCTLANISQLSIGYHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQ HHHHHHHCCCCCCHHHEEEEEECCEEEECCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHH LSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQGQQLSFAVTLNEQQQLSLNQ HHHHCEEEEEEEECCHHHHCCEEEEECCCCCCCEEEECCCCCEEEEEEEECCCHHCCHHH FSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT HEECCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCEEE LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDA EEECCCCCCCEECCCCCCCCEEEEECCEECCCCCCCCCCCCCEEEEECHHCCCCCCCCCE RINVITSGKNGKGNAVLTLGPGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLN EEEEEECCCCCCCCEEEEECCCCCEEECCEEEEEECCCEEEEEEEEECCCCHHHCCCCCC PTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGVTGRLQAIVDAQDSYWGSVNL CEEEECCCHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEE HLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY EECCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECHHCCHHHHHC GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRD CEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCC LDSFLWQGQLQAQSIGPIPLRGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTF HHHHHHCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCE YAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFVMSYRLQNHHWQLGAKEPVML EHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHCCCEEECCCCCCEEE RIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK EEECCCCHHHHHHCCCCCCCCCCCCCCCCEEHHHCCHHHHCCCEEEEEEECCCCCCEEEE LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTD EEHHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCEEEECCEEECCCEEEEEECCCCHH SISESNTVAGAAIDWLRYMEISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVVLNYQ HHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCCCEEEEEEEC HKENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSLPQGISSQPTAPIPTRAKE HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKCAKIVVGLLLISALSLLVLWKTLPTWLPRVAGYWLPAGSQLQLPVLPVWRNGALRVE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEEEECCCCCEEHH QLRYLAQDCTLANISQLSIGYHQGRWQLGAGDVVLETACLSQLPSGGDSSPLDLAQWQQQ HHHHHHHCCCCCCHHHEEEEEECCEEEECCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHH LSRFDLTINHLLVTPWQQYAGKLTLTSPDNNKSLQTLGYQGQQLSFAVTLNEQQQLSLNQ HHHHCEEEEEEEECCHHHHCCEEEEECCCCCCCEEEECCCCCEEEEEEEECCCHHCCHHH FSMAIPGMPQLFQLSGKIKIPLSLDEWPEQGALDGLLTTGYLSKPLLLNLSWQQQQGVLT HEECCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCEEE LTERGDNQPLARLPWQASANLIQIVNGQWQWPYGQQPLKGGVNLTLHDWDQGLEQTSIDA EEECCCCCCCEECCCCCCCCEEEEECCEECCCCCCCCCCCCCEEEEECHHCCCCCCCCCE RINVITSGKNGKGNAVLTLGPGNLGLINSELKFQLSGQVNLETMVFNATIPGLLSGSVLN EEEEEECCCCCCCCEEEEECCCCCEEECCEEEEEECCCEEEEEEEEECCCCHHHCCCCCC PTWILSPGALLRTYGNLTPELRIKDARWPLAGIRVTAAGVTGRLQAIVDAQDSYWGSVNL CEEEECCCHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEE HLDGQAQAFWPDKGNWQWRYWGSGNLPPLAARWDVGGTGSWRDTLITVDTLSTGFDRLQY EECCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECHHCCHHHHHC GLVKVDAPRLILTKPLTWQRDNHHPAFIAGLKLSAKKVEFSDGGGYLPPSVLSLQFNGRD CEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCC LDSFLWQGQLQAQSIGPIPLRGRWDGERLRGEGWWPKQSLMVFQPLISKDLGIKLRDGTF HHHHHHCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCE YAQAAFSAAREQGFTAGGHWVVNNGGMWLQDGELSGLDFVMSYRLQNHHWQLGAKEPVML EHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHCCCEEECCCCCCEEE RIASLNNLFDMQNITADLQGTYPYSETAPLTLSNVGMDILNGHLSLSALRLPQHDAAVLK EEECCCCHHHHHHCCCCCCCCCCCCCCCCEEHHHCCHHHHCCCEEEEEEECCCCCCEEEE LSQIDLSALFTVLQPKQFAMSGKVNGELPLYLNNPQWLVRNGWIANDGMLTLRLDKDLTD EEHHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCEEEECCEEECCCEEEEEECCCCHH SISESNTVAGAAIDWLRYMEISQSYTKVDLDNLGQLTLTSKVHGVNSQKNSTRAVVLNYQ HHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCCCCEEEEEEEC HKENLFQLWRSLRFGDNLQEWLQQTISLPSASSLPSASSLPQGISSQPTAPIPTRAKE HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 9025293 [H]