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The map label for this gene is rbsC [H]

Identifier: 51596529

GI number: 51596529

Start: 2597263

End: 2598324

Strand: Reverse

Name: rbsC [H]

Synonym: YPTB2205

Alternate gene names: 51596529

Gene position: 2598324-2597263 (Counterclockwise)

Preceding gene: 51596530

Following gene: 51596528

Centisome position: 54.76

GC content: 52.54

Gene sequence:

>1062_bases
ATGAACGAGAGAACCCAAATGCTGCATACGGCACGCTCTACACCGGCCAAAAGCGCTGATAAGCCGCGTTATCTGAAGCT
TTCGCGCTTATTACTGGAAGGGCGCGCCTTCTTTGCATTATTGGTCATTATTGCCGTGTTTTCACTCCTCTCACCCAACT
ACTTTTCTGGCGCAAATTTCCTGACGATGGCCTCACATGTGGCGATATTTGGCCTCCCGGCGATTGGAATGCTACTGGTT
ATTCTTAATGGTGGAATCGATCTTTCTGTTGGTTCGACATTGGGTCTGTCTGGCGTATTCGCGGGTTTTTTAATGCAAGG
CATCAGCATTGAGTCACTTGGCGTAGTGCTTTATTTGCCGGTCTGGGCGGTGGTAATTATGACCCTGGCGCTGGGCGCAT
TGGTTGGGCTTATCAATGGCATCTTGATCGCCATTTTTCGGGTACCTGCTTTTGTGGCAACACTCGGTTCACTCTATGTA
GCACGTGGCGCGGCACTGCTGATGACCAATGGCTTAACCTACAACAAACTCGCGGGTAGCCCCGAGCTAGGTAATACCGG
TTTTGACTGGTTGGGATTTAATCGCCTCTTTAATATTCCGATTGGCGTGCTGGCTCTGGGCGTCGTGGCACTGGCCTGTG
GATTTTTACTGATGCGTACCGCATTTGGTCGCTGGTTGTATGCCTCGGGAGGCAATGAGCGTGCCGCGGATCTCTCGGGT
GTTCCGGTTAAATTCGTCAAAATCAGCGTTTATGTTCTCTCCGGGGTTTGTGCGGCACTGGCCGGGTTGGTGCTCTCTTC
GCAGTTAACCTCCGCAGGCCCGACAGCGGGCACCACGTATGAGTTGACCGCCATTGCGGCGGTGGTGATTGGCGGTGCGG
CGCTGACCGGAGGGCGTGGCAACGTTCGAGGCACACTACTTGGGGCTTTTGTTATTGGCTTTCTTTCCGATGGCTTGGTG
ATTATTGGCGTATCCGCCTATTGGCAGACCGTATTTACTGGTGCGGTGATTGTTATGGCGGTATTGCTCAATACGTTGCA
GTACGGCCGACGAAGTAAATAA

Upstream 100 bases:

>100_bases
TTACCGCCATCTTTGATTCTGCGGTTTCTAAAGAACGCATCATGGCCGCTTCTGGCGAGTCCGTGATTGCCTGACATCAC
CCTACATGGAGCCGAAAAAT

Downstream 100 bases:

>100_bases
AACAAGTGCATCTATAAAACCTATAAGCGCAGGTGGGGAGAATGGGCAGTCCCTGCTATTGATGTCGTTTACGTCGAATT
AATGTCATTTACGTCGAATT

Product: ABC sugar/ribose transporter, permease subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNERTQMLHTARSTPAKSADKPRYLKLSRLLLEGRAFFALLVIIAVFSLLSPNYFSGANFLTMASHVAIFGLPAIGMLLV
ILNGGIDLSVGSTLGLSGVFAGFLMQGISIESLGVVLYLPVWAVVIMTLALGALVGLINGILIAIFRVPAFVATLGSLYV
ARGAALLMTNGLTYNKLAGSPELGNTGFDWLGFNRLFNIPIGVLALGVVALACGFLLMRTAFGRWLYASGGNERAADLSG
VPVKFVKISVYVLSGVCAALAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGNVRGTLLGAFVIGFLSDGLV
IIGVSAYWQTVFTGAVIVMAVLLNTLQYGRRSK

Sequences:

>Translated_353_residues
MNERTQMLHTARSTPAKSADKPRYLKLSRLLLEGRAFFALLVIIAVFSLLSPNYFSGANFLTMASHVAIFGLPAIGMLLV
ILNGGIDLSVGSTLGLSGVFAGFLMQGISIESLGVVLYLPVWAVVIMTLALGALVGLINGILIAIFRVPAFVATLGSLYV
ARGAALLMTNGLTYNKLAGSPELGNTGFDWLGFNRLFNIPIGVLALGVVALACGFLLMRTAFGRWLYASGGNERAADLSG
VPVKFVKISVYVLSGVCAALAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGNVRGTLLGAFVIGFLSDGLV
IIGVSAYWQTVFTGAVIVMAVLLNTLQYGRRSK
>Mature_353_residues
MNERTQMLHTARSTPAKSADKPRYLKLSRLLLEGRAFFALLVIIAVFSLLSPNYFSGANFLTMASHVAIFGLPAIGMLLV
ILNGGIDLSVGSTLGLSGVFAGFLMQGISIESLGVVLYLPVWAVVIMTLALGALVGLINGILIAIFRVPAFVATLGSLYV
ARGAALLMTNGLTYNKLAGSPELGNTGFDWLGFNRLFNIPIGVLALGVVALACGFLLMRTAFGRWLYASGGNERAADLSG
VPVKFVKISVYVLSGVCAALAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGNVRGTLLGAFVIGFLSDGLV
IIGVSAYWQTVFTGAVIVMAVLLNTLQYGRRSK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=44.1269841269841, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=39.937106918239, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1790524, Length=346, Percent_Identity=35.5491329479769, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1789992, Length=369, Percent_Identity=32.7913279132791, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=31.875, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=34.441087613293, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=34.8837209302326, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI145693214, Length=273, Percent_Identity=39.5604395604396, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787793, Length=297, Percent_Identity=37.7104377104377, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787794, Length=321, Percent_Identity=32.7102803738318, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36713; Mature: 36713

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERTQMLHTARSTPAKSADKPRYLKLSRLLLEGRAFFALLVIIAVFSLLSPNYFSGANF
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
LTMASHVAIFGLPAIGMLLVILNGGIDLSVGSTLGLSGVFAGFLMQGISIESLGVVLYLP
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
VWAVVIMTLALGALVGLINGILIAIFRVPAFVATLGSLYVARGAALLMTNGLTYNKLAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEHHCCCC
PELGNTGFDWLGFNRLFNIPIGVLALGVVALACGFLLMRTAFGRWLYASGGNERAADLSG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCC
VPVKFVKISVYVLSGVCAALAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRG
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEECCCC
NVRGTLLGAFVIGFLSDGLVIIGVSAYWQTVFTGAVIVMAVLLNTLQYGRRSK
CCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNERTQMLHTARSTPAKSADKPRYLKLSRLLLEGRAFFALLVIIAVFSLLSPNYFSGANF
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
LTMASHVAIFGLPAIGMLLVILNGGIDLSVGSTLGLSGVFAGFLMQGISIESLGVVLYLP
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
VWAVVIMTLALGALVGLINGILIAIFRVPAFVATLGSLYVARGAALLMTNGLTYNKLAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEHHCCCC
PELGNTGFDWLGFNRLFNIPIGVLALGVVALACGFLLMRTAFGRWLYASGGNERAADLSG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCC
VPVKFVKISVYVLSGVCAALAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRG
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEECCCC
NVRGTLLGAFVIGFLSDGLVIIGVSAYWQTVFTGAVIVMAVLLNTLQYGRRSK
CCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]