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The map label for this gene is arrD [H]

Identifier: 51596090

GI number: 51596090

Start: 2109845

End: 2110351

Strand: Reverse

Name: arrD [H]

Synonym: YPTB1755

Alternate gene names: 51596090

Gene position: 2110351-2109845 (Counterclockwise)

Preceding gene: 51596091

Following gene: 51596089

Centisome position: 44.48

GC content: 57.4

Gene sequence:

>507_bases
ATGAACTCAATCGTTAAGCGTTGTCTGGTCGGCGTCATTCTGGCGCTGGCCGCCACCTTACCGAACTACCAGACCTTAAA
AGCATCGCCCGCCGGGCTAAAACTGATTGCGGATTATGAGGGGTGTCAGCTCAACGCCTACCAGTGCAGCGCCAACGTTT
GGACAAATGGCATCGGCCACACGGTCGGGGTTAAGCCGGGCAGCGTGATCAGTGAACGACAGGTGGCGGTCAATCTGGTT
GCTGACGTGCAGCGGGTCGAACGGGCTATCGCTGTCTGTATGCCGGTGACCATGCCGCAACCGGTGTATGACGCGGTAGT
GTCGTTTGCCTTTAACGTCGGCCCCGGCGCTGCTTGCCGCTCGACGCTGGCATTTTTTGTCAACAAGAGTGACTGGCACA
GCGCCTGTAATCAGTTGCCGCGCTGGGTCTATGTCAATGGCGTGAAAACCAAAGGGTTAGAGCGCCGTCGTGTTACAGAG
CAAAAACACTGCTTGAGCGGGGCCTGA

Upstream 100 bases:

>100_bases
GCTGCGGTGGCCGCTGCGGCTACCTGTCTTATCAACTGGTACTACCGGCGCAAGAGTTATTTCTTGCTGAAAGAATTGGG
TGTCAGGCGGGAGGTGTTCG

Downstream 100 bases:

>100_bases
TATGCGCACAGCAATAATGTTGATCGTGACGTTACTGGCCGCGCTGGGGTGGTATGCCAGTCGCCTGAGTGACGATATCG
ACAACGCTAACCGGATTATT

Product: phage lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNSIVKRCLVGVILALAATLPNYQTLKASPAGLKLIADYEGCQLNAYQCSANVWTNGIGHTVGVKPGSVISERQVAVNLV
ADVQRVERAIAVCMPVTMPQPVYDAVVSFAFNVGPGAACRSTLAFFVNKSDWHSACNQLPRWVYVNGVKTKGLERRRVTE
QKHCLSGA

Sequences:

>Translated_168_residues
MNSIVKRCLVGVILALAATLPNYQTLKASPAGLKLIADYEGCQLNAYQCSANVWTNGIGHTVGVKPGSVISERQVAVNLV
ADVQRVERAIAVCMPVTMPQPVYDAVVSFAFNVGPGAACRSTLAFFVNKSDWHSACNQLPRWVYVNGVKTKGLERRRVTE
QKHCLSGA
>Mature_168_residues
MNSIVKRCLVGVILALAATLPNYQTLKASPAGLKLIADYEGCQLNAYQCSANVWTNGIGHTVGVKPGSVISERQVAVNLV
ADVQRVERAIAVCMPVTMPQPVYDAVVSFAFNVGPGAACRSTLAFFVNKSDWHSACNQLPRWVYVNGVKTKGLERRRVTE
QKHCLSGA

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=129, Percent_Identity=35.6589147286822, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 18133; Mature: 18133

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIVKRCLVGVILALAATLPNYQTLKASPAGLKLIADYEGCQLNAYQCSANVWTNGIGH
CHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCEEEEEEECCCHHCCCCCC
TVGVKPGSVISERQVAVNLVADVQRVERAIAVCMPVTMPQPVYDAVVSFAFNVGPGAACR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH
STLAFFVNKSDWHSACNQLPRWVYVNGVKTKGLERRRVTEQKHCLSGA
HHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSIVKRCLVGVILALAATLPNYQTLKASPAGLKLIADYEGCQLNAYQCSANVWTNGIGH
CHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCEEEEEEECCCHHCCCCCC
TVGVKPGSVISERQVAVNLVADVQRVERAIAVCMPVTMPQPVYDAVVSFAFNVGPGAACR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH
STLAFFVNKSDWHSACNQLPRWVYVNGVKTKGLERRRVTEQKHCLSGA
HHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]