Click here to switch to the map view.

The map label for this gene is ompF [H]

Identifier: 51595775

GI number: 51595775

Start: 1722117

End: 1723199

Strand: Reverse

Name: ompF [H]

Synonym: YPTB1435

Alternate gene names: 51595775

Gene position: 1723199-1722117 (Counterclockwise)

Preceding gene: 51595776

Following gene: 51595774

Centisome position: 36.32

GC content: 45.24

Gene sequence:

>1083_bases
ATGATGAAGCGCAATATTCTTGCAGTAGTAATCCCAGCTCTGTTAGCCGCTGGTGCAGCTAATGCAGCAGAAATCTATAA
CAAAGATGGCAACAAACTTGACCTGTACGGTAAAGTTGACGCACGTCACTCTTTCTCTGATGCAGCTGGCCAAGACGGTG
ACAAGTCTTACGTTCGTTTCGGCTTCAAAGGTGAAACCCAAATTACTGACCAACTGACCGGTTACGGCCAGTGGGAATAC
AACATTCAAGCAAACAACGCTGAAGATTCAGGCGCTCAAGACGGCAACGCAACCCGTCTGGGCTTTGCTGGTCTGAAATT
TGCTGAATTCGGTTCATTCGACTATGGCCGTAACTACGGCGTAATCTATGACGTTAACGCATGGACTGACATGCTGCCAG
TGTTCGGTGGTGATTCAATCTCCAACTCTGACAACTTCATGACTGGCCGTTCTACTGGCCTGGCAACTTACCGTAACAAC
AATTTCTTCGGTATGGTTGACGGCCTGAACTTTGCCCTGCAATACCAAGGCAAAAATGACCGTTCTGATATCAAAGAAGC
TAACGGTGACGGCTTCGGTATCGGTTCTACTTATGATCTCGGTAATGGCATTAACTTCGGTGCTGGTTTCTCTTCTTCAA
ACCGTACTCTTGATCAAAAATATGGTTCTACCGCTGAAGGCGACAAAGCTCAGGCATGGAACGTTGGTGCTAAATACGAC
GCAAACAACGTATACCTGGCTGTAATGTATGCTGAGACTCAGAACCTGACTCCATACGGTTTTTATGATTTCACCATCGC
GAACAAGACTCGCGATATCGAAATCACCGCACAGTATCAGTTCGACTTTGGTCTGCGCCCATCACTGGGTTATGTTCAAT
CCAAAGGTAAGGATCTGAACAATGTTGATGCTAACCATGATCTGGTGAAATATGTTTCTGTTGGTACTTACTACTACTTC
AACAAAAACATGTCTACCTATGTTGATTACAAAATCAACCTGTTGGACAAAGACCTGTTCACAGAAGTTAACCGAATCAT
GACAGACGACGTTGTTGCTGTTGGCTTGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
GCGTTCAGACACAGACGACACCAAACTCTCAACAATAGTTCCATAAAAATTATTGGCGGCAGTGGCAGGTGTCCGAATAA
CACCAATGAGGGTAATAATA

Downstream 100 bases:

>100_bases
GTCAAACTTAACGAGGCAGTTTATCTGCTGACCTAAGTTGAAAAAAGACAGGGCCTCGGCTCTGTCTTTTTGTTTCTATT
TTGAGCAGATTGATGGAGAT

Product: porin

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDAAGQDGDKSYVRFGFKGETQITDQLTGYGQWEY
NIQANNAEDSGAQDGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNN
NFFGMVDGLNFALQYQGKNDRSDIKEANGDGFGIGSTYDLGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
ANNVYLAVMYAETQNLTPYGFYDFTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNNVDANHDLVKYVSVGTYYYF
NKNMSTYVDYKINLLDKDLFTEVNRIMTDDVVAVGLVYQF

Sequences:

>Translated_360_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDAAGQDGDKSYVRFGFKGETQITDQLTGYGQWEY
NIQANNAEDSGAQDGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNN
NFFGMVDGLNFALQYQGKNDRSDIKEANGDGFGIGSTYDLGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
ANNVYLAVMYAETQNLTPYGFYDFTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNNVDANHDLVKYVSVGTYYYF
NKNMSTYVDYKINLLDKDLFTEVNRIMTDDVVAVGLVYQF
>Mature_360_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDAAGQDGDKSYVRFGFKGETQITDQLTGYGQWEY
NIQANNAEDSGAQDGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNN
NFFGMVDGLNFALQYQGKNDRSDIKEANGDGFGIGSTYDLGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
ANNVYLAVMYAETQNLTPYGFYDFTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNNVDANHDLVKYVSVGTYYYF
NKNMSTYVDYKINLLDKDLFTEVNRIMTDDVVAVGLVYQF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=357, Percent_Identity=62.7450980392157, Blast_Score=445, Evalue=1e-126,
Organism=Escherichia coli, GI1786436, Length=363, Percent_Identity=58.9531680440771, Blast_Score=416, Evalue=1e-117,
Organism=Escherichia coli, GI1788544, Length=374, Percent_Identity=58.5561497326203, Blast_Score=402, Evalue=1e-113,
Organism=Escherichia coli, GI1787160, Length=369, Percent_Identity=57.9945799457995, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39754; Mature: 39754

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDAAGQDGDKSYVRF
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE
GFKGETQITDQLTGYGQWEYNIQANNAEDSGAQDGNATRLGFAGLKFAEFGSFDYGRNYG
ECCCCCEEHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCC
VIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNNNFFGMVDGLNFALQYQGKND
EEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCC
RSDIKEANGDGFGIGSTYDLGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
HHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCEEC
ANNVYLAVMYAETQNLTPYGFYDFTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLN
CCCEEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCHHHHCCCCCC
NVDANHDLVKYVSVGTYYYFNKNMSTYVDYKINLLDKDLFTEVNRIMTDDVVAVGLVYQF
CCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDAAGQDGDKSYVRF
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE
GFKGETQITDQLTGYGQWEYNIQANNAEDSGAQDGNATRLGFAGLKFAEFGSFDYGRNYG
ECCCCCEEHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCC
VIYDVNAWTDMLPVFGGDSISNSDNFMTGRSTGLATYRNNNFFGMVDGLNFALQYQGKND
EEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCC
RSDIKEANGDGFGIGSTYDLGNGINFGAGFSSSNRTLDQKYGSTAEGDKAQAWNVGAKYD
HHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCEEC
ANNVYLAVMYAETQNLTPYGFYDFTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLN
CCCEEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCHHHHCCCCCC
NVDANHDLVKYVSVGTYYYFNKNMSTYVDYKINLLDKDLFTEVNRIMTDDVVAVGLVYQF
CCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]