Click here to switch to the map view.

The map label for this gene is ybaO

Identifier: 51595320

GI number: 51595320

Start: 1166656

End: 1167117

Strand: Direct

Name: ybaO

Synonym: YPTB0970

Alternate gene names: 51595320

Gene position: 1166656-1167117 (Clockwise)

Preceding gene: 51595318

Following gene: 51595321

Centisome position: 24.59

GC content: 46.97

Gene sequence:

>462_bases
ATGCTAGATAAAACAGATCGTAAACTACTGCGTATGCTGCAGGAAGACTGCACACAATCGCTGCACGTGTTGGCCGATGC
GGTCAATCTAACGTCAACCCCTTGCTGGAAACGTTTAAAGCGTTTGGAGGATGAAGGTTTTATCCGCGGGCGAGTGGCGT
TACTGGATAGTGAAAAATTGGGGCTGGGGCTGACGGCATTTGTGCTGATCAAAACACAGCAGCATAACAGTGACTGGTAC
CAAGAGTTTGTCGCATTTACTAAGCAAATGCCTGAGGTACTGGCTTTCTATCGTATGGCCGGAGAATACGACTATCTCAT
GCAAGTAGAAGTGGCAGATATGAAAAGTTATGACCGTTTTTATAAACGGATGGTTAACGGCGTTCCGGGGCTTATTGATG
TCACGTCAAGTTTTGCGATGGAAAAGATTAAATACACCACCGTGCTGCCAGTCCCGGAGTGA

Upstream 100 bases:

>100_bases
AAGTCATGGCGACTAGGTTAACGGTTATCAAAGAAAAAAGCGTTGCCATTTTTCCTTCTTTATCGCCAAATGGTAGAAAT
TAATTCTATGGTTTACCACT

Downstream 100 bases:

>100_bases
ATAATTCACTAAAAAATCTGTTTATCAATGGTATCCTAGAGCATCGTCTATCGCGAAAAACACACCGACACTTTCGGTAT
CAGACCATGGAATAAAACTG

Product: transcription regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRGRVALLDSEKLGLGLTAFVLIKTQQHNSDWY
QEFVAFTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDRFYKRMVNGVPGLIDVTSSFAMEKIKYTTVLPVPE

Sequences:

>Translated_153_residues
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRGRVALLDSEKLGLGLTAFVLIKTQQHNSDWY
QEFVAFTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDRFYKRMVNGVPGLIDVTSSFAMEKIKYTTVLPVPE
>Mature_153_residues
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRGRVALLDSEKLGLGLTAFVLIKTQQHNSDWY
QEFVAFTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDRFYKRMVNGVPGLIDVTSSFAMEKIKYTTVLPVPE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=74.8344370860927, Blast_Score=243, Evalue=6e-66,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=33.1081081081081, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17742; Mature: 17742

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRGRVALLDSEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHEEEEECCCCC
GLGLTAFVLIKTQQHNSDWYQEFVAFTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDRF
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
YKRMVNGVPGLIDVTSSFAMEKIKYTTVLPVPE
HHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCC
>Mature Secondary Structure
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRGRVALLDSEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHEEEEECCCCC
GLGLTAFVLIKTQQHNSDWYQEFVAFTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDRF
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
YKRMVNGVPGLIDVTSSFAMEKIKYTTVLPVPE
HHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]