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The map label for this gene is rscB

Identifier: 51595229

GI number: 51595229

Start: 1055346

End: 1057136

Strand: Direct

Name: rscB

Synonym: YPTB0879

Alternate gene names: 51595229

Gene position: 1055346-1057136 (Clockwise)

Preceding gene: 51595228

Following gene: 51595230

Centisome position: 22.24

GC content: 45.28

Gene sequence:

>1791_bases
ATGAGAGATTGCTATTGCCATGGCATGTTATGGTTCCCATTAAAATTCAGTTTATTAGCTTTATTTTCTCTTTCTTGCTC
ACCATTAATCGCCACACCTCAAGTGCTAAATGTGCCAAACGCGGGGGCGATTAGTAATGAAATTAGGCAAACAACAATAG
AGCCATTGAACGCCCCAGAGGAAACGGATATCAAGCTTCCTCAATTAAATAAGCCCACGCCACCAGAAGGGGGACTCGCG
ACTGAACGCATTACCCTGCACAGGGTTAGATTTGAAGGCGATGTCTCGTTATTTCAGCCTGGTATTACCGCTGACAATAA
GGATTTACAGGCGCTGATTACCCCTTGGTTAAATCGGTCACTCACATTTAACGATTTACAAGCCATGACTTTTGCCGTGA
CTCGCTTCTATCGGAAAAAAGGGTGGGTCGCAGCTCAGGCAATATTACCACCACAAACGATTCGGGACGGTATTATTGTG
GTGCGCGTTATCGCGGGCCGATTAGATAAGCCTCAGATAAATAACCAAAGTAGTTTGAATTCTCACTTTATCACCACGGT
AATTGAAAGTAATAGCTGCAGTAAAAAAAATGGGATCTTTGGTGATAAAGATTGTGCCGCGTCTCCCGTTGAATTATCTC
GCCTTGAACGCACGGTGCTAATTTTGAATGAAATACCGGGCGTTGAGGCTTCTTTGGCATTAAAACCGGGCACTCAATCT
GGAATGACTCGGATTTATGTTGATGTTACACCCGGAAAAAAAATGATGGCTTATCTTGCGGCCGATAATCAGGGAAATGA
TTATTCCGGTCATAATCGTTTGTTAACCGGCGGTGTGCTTAATAACCTCACTGGCTGGGGAGATCAATTACGGGCAGATT
TAATTTTATCCAGCTCGGCAGATGTCTTTAATGGTTTACTGGATTATAACTTCCCCATTAATAGCTATGGTACCCGGGCT
GCACTTAATTATAGCTACCTGGATTATACGTTAACGGGGCCTTTCTCCGTATTAGATGCACGTGGTCACTCTACTACCTG
GGGCATCAATTTACGACATCCATGGATACGCACCTCTGCTGCACGAATTGATGTTAATGCGGGTTATTATCAGGCCAGAA
TGCGTGATGCATTAATTTTGTTACCAGAACAAAAACGTAACCTGAATGCGGGCGAATTTGGTATCAGTGGCACTTTTACT
GCCTTACCCCGTGGACTCAGTAATTTCAATTTACTGGGCACGGCAGGGGATCTTGCACTGGATGACGAATACAGCCAAAG
CATAAATACGCTGACCCATGTGAGCGGTAATTTTAGCCGCTTTAATTATCGCGTCGGCCATGATCAGGGCATTGGGTCTC
ACGTCTCTTTCTTTAATCAATTTACCGGTCAAATGGCCAGTAAAAATCTGGATAGCTCGCAAAAATTACTCTTGGGTGGG
CCACTGGCGGTTCGTGCCTATGGTATTGGCGACGGTTCTGTCGATAAAGGGACGATTTTTACCACGGAATTACGCACACG
CTGGCAGCCTGATTTTCCTGACTGGGCCGGCTATGGGCATCAAATTACCGTAGCGGCGTTTTTTGACCAAGGGTGGGGGG
CTTATTATCGCCAGCCTATCGTGGGCCTCTCTGAAAATAATATCAACATATCTGGCTTTGGTTCCTATATCACTTTCGCA
CGCCCGGCAGATTATTTTTTGAATCTGACCTGGGCACACCGAACCGGTCAGGCAGTGACCCGTCATCAAGATAACGATCA
GCTCTGGTTAAGTGCTTATAAGATGTTTTAG

Upstream 100 bases:

>100_bases
GCATTTATTAATTAATGATAACCGTATGGGCCAGTGCTAAATAATAATATTTATTGTTATTTTTACTGGCATTACCCCTG
TTTTTATTAGGCGTTTCTTT

Downstream 100 bases:

>100_bases
TGCTTATCGGCATATTTGTCAGATTTAATGGACGCGCATAATGAACAGTAAATTGTACAAACTTATTTTTTGTCGTCGGC
TGGGCTGCTTAATTGCCGTG

Product: TPS secretion family afimbrail adhesion

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 596

Protein sequence:

>596_residues
MRDCYCHGMLWFPLKFSLLALFSLSCSPLIATPQVLNVPNAGAISNEIRQTTIEPLNAPEETDIKLPQLNKPTPPEGGLA
TERITLHRVRFEGDVSLFQPGITADNKDLQALITPWLNRSLTFNDLQAMTFAVTRFYRKKGWVAAQAILPPQTIRDGIIV
VRVIAGRLDKPQINNQSSLNSHFITTVIESNSCSKKNGIFGDKDCAASPVELSRLERTVLILNEIPGVEASLALKPGTQS
GMTRIYVDVTPGKKMMAYLAADNQGNDYSGHNRLLTGGVLNNLTGWGDQLRADLILSSSADVFNGLLDYNFPINSYGTRA
ALNYSYLDYTLTGPFSVLDARGHSTTWGINLRHPWIRTSAARIDVNAGYYQARMRDALILLPEQKRNLNAGEFGISGTFT
ALPRGLSNFNLLGTAGDLALDDEYSQSINTLTHVSGNFSRFNYRVGHDQGIGSHVSFFNQFTGQMASKNLDSSQKLLLGG
PLAVRAYGIGDGSVDKGTIFTTELRTRWQPDFPDWAGYGHQITVAAFFDQGWGAYYRQPIVGLSENNINISGFGSYITFA
RPADYFLNLTWAHRTGQAVTRHQDNDQLWLSAYKMF

Sequences:

>Translated_596_residues
MRDCYCHGMLWFPLKFSLLALFSLSCSPLIATPQVLNVPNAGAISNEIRQTTIEPLNAPEETDIKLPQLNKPTPPEGGLA
TERITLHRVRFEGDVSLFQPGITADNKDLQALITPWLNRSLTFNDLQAMTFAVTRFYRKKGWVAAQAILPPQTIRDGIIV
VRVIAGRLDKPQINNQSSLNSHFITTVIESNSCSKKNGIFGDKDCAASPVELSRLERTVLILNEIPGVEASLALKPGTQS
GMTRIYVDVTPGKKMMAYLAADNQGNDYSGHNRLLTGGVLNNLTGWGDQLRADLILSSSADVFNGLLDYNFPINSYGTRA
ALNYSYLDYTLTGPFSVLDARGHSTTWGINLRHPWIRTSAARIDVNAGYYQARMRDALILLPEQKRNLNAGEFGISGTFT
ALPRGLSNFNLLGTAGDLALDDEYSQSINTLTHVSGNFSRFNYRVGHDQGIGSHVSFFNQFTGQMASKNLDSSQKLLLGG
PLAVRAYGIGDGSVDKGTIFTTELRTRWQPDFPDWAGYGHQITVAAFFDQGWGAYYRQPIVGLSENNINISGFGSYITFA
RPADYFLNLTWAHRTGQAVTRHQDNDQLWLSAYKMF
>Mature_596_residues
MRDCYCHGMLWFPLKFSLLALFSLSCSPLIATPQVLNVPNAGAISNEIRQTTIEPLNAPEETDIKLPQLNKPTPPEGGLA
TERITLHRVRFEGDVSLFQPGITADNKDLQALITPWLNRSLTFNDLQAMTFAVTRFYRKKGWVAAQAILPPQTIRDGIIV
VRVIAGRLDKPQINNQSSLNSHFITTVIESNSCSKKNGIFGDKDCAASPVELSRLERTVLILNEIPGVEASLALKPGTQS
GMTRIYVDVTPGKKMMAYLAADNQGNDYSGHNRLLTGGVLNNLTGWGDQLRADLILSSSADVFNGLLDYNFPINSYGTRA
ALNYSYLDYTLTGPFSVLDARGHSTTWGINLRHPWIRTSAARIDVNAGYYQARMRDALILLPEQKRNLNAGEFGISGTFT
ALPRGLSNFNLLGTAGDLALDDEYSQSINTLTHVSGNFSRFNYRVGHDQGIGSHVSFFNQFTGQMASKNLDSSQKLLLGG
PLAVRAYGIGDGSVDKGTIFTTELRTRWQPDFPDWAGYGHQITVAAFFDQGWGAYYRQPIVGLSENNINISGFGSYITFA
RPADYFLNLTWAHRTGQAVTRHQDNDQLWLSAYKMF

Specific function: Probable member of a two partner secretion pathway (TPS) in which it mediates the secretion of huxA [H]

COG id: COG2831

COG function: function code U; Hemolysin activation/secretion protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tpsB (TC 1.B.20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013686 [H]

Pfam domain/function: PF08479 POTRA_2 [H]

EC number: NA

Molecular weight: Translated: 65872; Mature: 65872

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDCYCHGMLWFPLKFSLLALFSLSCSPLIATPQVLNVPNAGAISNEIRQTTIEPLNAPE
CCCEEECCEEEHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCC
ETDIKLPQLNKPTPPEGGLATERITLHRVRFEGDVSLFQPGITADNKDLQALITPWLNRS
CCCCCCCCCCCCCCCCCCCEECEEEEEEEEECCCHHEECCCCCCCCCHHHHHHHHHHCCC
LTFNDLQAMTFAVTRFYRKKGWVAAQAILPPQTIRDGIIVVRVIAGRLDKPQINNQSSLN
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCEEEEEEHHCCCCCCCCCCCCCCC
SHFITTVIESNSCSKKNGIFGDKDCAASPVELSRLERTVLILNEIPGVEASLALKPGTQS
CEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCEEEEEEECCCCCCEEEEECCCCCC
GMTRIYVDVTPGKKMMAYLAADNQGNDYSGHNRLLTGGVLNNLTGWGDQLRADLILSSSA
CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEECHHHHCCCCCCHHHEEEEEECCCC
DVFNGLLDYNFPINSYGTRAALNYSYLDYTLTGPFSVLDARGHSTTWGINLRHPWIRTSA
HHHHHHECCCCCCCCCCCEEEEEEEEEEEEECCCCEEEECCCCCEEEEEEECCCCEECCE
ARIDVNAGYYQARMRDALILLPEQKRNLNAGEFGISGTFTALPRGLSNFNLLGTAGDLAL
EEEEECCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCEE
DDEYSQSINTLTHVSGNFSRFNYRVGHDQGIGSHVSFFNQFTGQMASKNLDSSQKLLLGG
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
PLAVRAYGIGDGSVDKGTIFTTELRTRWQPDFPDWAGYGHQITVAAFFDQGWGAYYRQPI
CEEEEEEECCCCCCCCCEEEEEEHHCCCCCCCCHHCCCCCEEEEEEEEECCCCHHHHCCC
VGLSENNINISGFGSYITFARPADYFLNLTWAHRTGQAVTRHQDNDQLWLSAYKMF
EECCCCCEEEEECCCEEEECCCCCEEEEEEEECCCCCHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRDCYCHGMLWFPLKFSLLALFSLSCSPLIATPQVLNVPNAGAISNEIRQTTIEPLNAPE
CCCEEECCEEEHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCC
ETDIKLPQLNKPTPPEGGLATERITLHRVRFEGDVSLFQPGITADNKDLQALITPWLNRS
CCCCCCCCCCCCCCCCCCCEECEEEEEEEEECCCHHEECCCCCCCCCHHHHHHHHHHCCC
LTFNDLQAMTFAVTRFYRKKGWVAAQAILPPQTIRDGIIVVRVIAGRLDKPQINNQSSLN
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCEEEEEEHHCCCCCCCCCCCCCCC
SHFITTVIESNSCSKKNGIFGDKDCAASPVELSRLERTVLILNEIPGVEASLALKPGTQS
CEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCEEEEEEECCCCCCEEEEECCCCCC
GMTRIYVDVTPGKKMMAYLAADNQGNDYSGHNRLLTGGVLNNLTGWGDQLRADLILSSSA
CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEECHHHHCCCCCCHHHEEEEEECCCC
DVFNGLLDYNFPINSYGTRAALNYSYLDYTLTGPFSVLDARGHSTTWGINLRHPWIRTSA
HHHHHHECCCCCCCCCCCEEEEEEEEEEEEECCCCEEEECCCCCEEEEEEECCCCEECCE
ARIDVNAGYYQARMRDALILLPEQKRNLNAGEFGISGTFTALPRGLSNFNLLGTAGDLAL
EEEEECCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCEE
DDEYSQSINTLTHVSGNFSRFNYRVGHDQGIGSHVSFFNQFTGQMASKNLDSSQKLLLGG
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
PLAVRAYGIGDGSVDKGTIFTTELRTRWQPDFPDWAGYGHQITVAAFFDQGWGAYYRQPI
CEEEEEEECCCCCCCCCEEEEEEHHCCCCCCCCHHCCCCCEEEEEEEEECCCCHHHHCCC
VGLSENNINISGFGSYITFARPADYFLNLTWAHRTGQAVTRHQDNDQLWLSAYKMF
EECCCCCEEEEECCCEEEECCCCCEEEEEEEECCCCCHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]