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The map label for this gene is yfiB [H]

Identifier: 51594942

GI number: 51594942

Start: 697195

End: 697701

Strand: Reverse

Name: yfiB [H]

Synonym: YPTB0591

Alternate gene names: 51594942

Gene position: 697701-697195 (Counterclockwise)

Preceding gene: 51594943

Following gene: 51594941

Centisome position: 14.7

GC content: 46.75

Gene sequence:

>507_bases
ATGCAGAAAATGCAAAACAAGCGTTTAATACAACGTATTTGGGTCAGTTTCCTGGCAATGGGTTTTATGCTATTAGTGGG
GTGTCAGGCTAAACCACAAGGGCTAACACCTGATCAAATCACCGCATTGCAAGAGCAGGGGTTTAAATTAACCGATAATG
GCTGGGAATTTGGCCTGGCAAATAAAGTGCTATTCGACAGTGATGTGAAAAAATTAAATTCTGAGGGTATGCAAACCGTA
CAAAAGATTGGCCGGATATTGTCAGATGTGGGGATTAAGCATATGCGGGTTGATGGTCATACCGACTCCGTCGGGAAGGA
TGACTATAATCAACAATTATCCTACCAGCGCGCCTTAGCCGTAGCCGATACTCTCGCTACCGTCGGTATTCCAAAGAGTA
ATATTGATGTTCGTGGCCGTGGCAAGTTAGAGCCCGTCGCGGATAACCGCACCAGTAAAGGCCGAGCCGAAAACCGCCGC
GTCGCCATTATTATCACCGCGTCCTAA

Upstream 100 bases:

>100_bases
ATGAAGCGATGTATCAGGCGAAGAAAAACTTCCGGTCTGGCAAGCGTATTTTTGCCTATCAGCCGAATACGACTAACACA
GAAAGTTTAGGATAGGTGAC

Downstream 100 bases:

>100_bases
CGTCCTTTATTTACCGGTTTGCGGCTGTAAACCGGTTTCTGCCTTTATTCTGCTCAGATATAGACCCAGAGCCATTGGCA
ATGCAGCTTAGCTGCCAGGA

Product: OmpA/OmpF family outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MQKMQNKRLIQRIWVSFLAMGFMLLVGCQAKPQGLTPDQITALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTV
QKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRR
VAIIITAS

Sequences:

>Translated_168_residues
MQKMQNKRLIQRIWVSFLAMGFMLLVGCQAKPQGLTPDQITALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTV
QKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRR
VAIIITAS
>Mature_168_residues
MQKMQNKRLIQRIWVSFLAMGFMLLVGCQAKPQGLTPDQITALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTV
QKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRR
VAIIITAS

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=154, Percent_Identity=45.4545454545455, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI48994946, Length=110, Percent_Identity=38.1818181818182, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787191, Length=96, Percent_Identity=38.5416666666667, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18629; Mature: 18629

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKMQNKRLIQRIWVSFLAMGFMLLVGCQAKPQGLTPDQITALQEQGFKLTDNGWEFGLA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCEEECCC
NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
VADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAIIITAS
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MQKMQNKRLIQRIWVSFLAMGFMLLVGCQAKPQGLTPDQITALQEQGFKLTDNGWEFGLA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCEEECCC
NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
VADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAIIITAS
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]