| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is yhcD [H]
Identifier: 51594714
GI number: 51594714
Start: 424212
End: 426590
Strand: Direct
Name: yhcD [H]
Synonym: YPTB0359
Alternate gene names: 51594714
Gene position: 424212-426590 (Clockwise)
Preceding gene: 51594713
Following gene: 51594715
Centisome position: 8.94
GC content: 46.32
Gene sequence:
>2379_bases GTGGTCGCCCGTTGTATTAATCTCCAGTGTATCGCATTCTTATTCTCTTTTTTTCCTACGCTGGCTTTCCCTGTCACAGA AGAGGGTGAGGTGGTTTTTGACATAGAAACGCTGGAGAGATTAGGTTATTCAGCTGAATTGGCAAAATTCTTCAGCGGTC AGGATAGATTTCTACCCGGCCAACATGATGTCACTATCATTATTAATGCCAGCAAGACCTACCGTATTGCAGCGACCTTC GATAGCGAAGGGAAACTGTGTATGGATAAAGCATTACTGATGGCCTTGAAATTACGAAATACAGAGAGTGACGGCAGTTG TGAGAATATGGAAGCCCGGTGGCCGGGTATGGTTGTTAAACTCTTTCCCGGCCAGTTCCGGGTGGAAATAACATTGCCGC AAGAGGCGTTTGATCCCGAAATGGAAGGAAGTGAGTATCAGCAAGGAGGGCATGCACTATTGCTTAATTACAATATCTTT GGCCAACGGGTCGAAAGTAACAATAGCCGCTTTAATCTTGTTCAGGGGCAATTTGAACCGGGGATTAATTTTAAAAATTG GGTACTGAGAAACCGAGGTTCCTACAGTTATAATCAAGGAGTGAGCCAATACTATAATCAGGAAACCTCTGCTTTACGCG CGGTTGAATCATTGAAATCCGTGGTTCAACTGGGTGAATTTGGTTTAGTGGGTAACACCTTTTCTGGTTTACCCGTAACC GGCATTCAGTTGTATTCCGATGACGCACAACGGGATGATACACAATTGATCGTACCCATCGAGGGGATTGCCAATACCAA TGCCACCATTGAAATCCGTCAGCGTGGGCGGGTTATTTATCGTACCATAGTGGCGCCAGGTCCTTTTTCGTTATCCAATA TCAGTAACTTCTCAAGTGGTGTTAACACCGATGTCAGTATTATCGAAGAGGATGGCACTCAACAGAATTTTACGGTGACG AGCGCCCTTGATATTAACGCTGAACAACAGGCATCCATCTACCAACTGGCCGTGGGCCGTTACCGGGACATGTTTACCGG TGAGGACAGGCCGTCACCGCTGCTGCTTTCCGGAGAAATGTCATTCAATCCGGCGGCTACCTTTTATATGACGTCGGCTG GGTTACTGTCCTCTGGCTATCAAAATATCCGTGTGCAAAATCTTTACAGTGGATGGGATCAGGCCTGGTTTTCAGCGGCA GCAAGTTATGCTAATACCAAAGATGCAGGACAGGGATACCAATTTAGCGTTCAGAATCAGATGACGATTAACGGTAATTT TGGTGTTTCATGGTCCTCGGTTTATGGCTCGGCCAATTACTGGTCACCGGATGATGCCCTAAGCAGTAGCAATAATCTGA ATGACCTGATGTTTGGAAAATTAAAAAATGCAACGTCGGTAGCCGTGAGCTGGGTGCACCCACGTTGGGGGGCATTCTCC TATGCTTTATCAAATAATATGTATTATCAGGCTTCTGGTCGTACTTACCATATTTTCTCAATTAGCGAACAATTTGGCCG GGCGACTACCATCTTGAGTTCTCAATTAAGTTCGCAAGGGCAAAATTCGCTCTATGTTGGTATCAATATGCCATTGGGTA ATGGGACGTTAAGTGGCCGGGTGCAACGTAACAATGGCAATGTGGCACTTGGTAGTACTTATCAAGGGCGATGGGGTGAC AACAAAGATTATTCGGTAGGGATCAGCGGTGACAATAGGCAACGGCGTATCAATGGTTCGATGAATATAAGGACGGCCTA TTCACAATTAACCGGTGGGGTTTCTCAAGCGACAAACAATAGCCGGTCTGCATATCTGTCATCGCGTGGTTCAGTGGCTT ACGTGAATAACACCTTTGCCACATCGTCGTCATCGGTTGGCGATACTTTTGCGGTGGTGAACATACCCAACCAACCCGGT TTGCGCGTTTCATCGCCGAGCAGCGGTATTGCGATTACGGATTATGCTGGGATAGCCTTGCTGCCATTAGTGAGGCCTTA CACCGCTTCGAAAGTACAAATAAGCACGCAAACATTGCCGCTGAATATTCGGCTTAATAACACCAGTGCCGATTTGCTGA TGACTCGAGGCTCGGTAGCAACCCATCATTTTGAGACAACAGAAACCCGCCAATTGCTGCTAACCATCCGTGGTAGTGAT GGTGAAATGCTGCCGATTGGTGCCAATGTATTGGATGAAAAAGGTAACTTTCTGGGGACGATTATCGGTGACGGAAACTT TATGCTGGAAAATAAGGCGATTGGCGTGACATTACGTGTTAAGGCAAATAACCGCGATGAATGTCGCGTTAACTACCGTG AACCTGAAAAATTTGACCCCGATGTATTGTATGAAGTTGCCGATGCGGTCTGTCAGTAA
Upstream 100 bases:
>100_bases ATATACCATTGTTTTATTTAACTCTAGGGTGATATTCGATTTTTCAATAATCAATTCACCTATTAGTTTTTATTAATAAT TAATTTTTCAGGGAATTTTC
Downstream 100 bases:
>100_bases GTTTTACATTATAAAAGCAGCAATGACAAAAACAGACCAAATGTGAAGACTTTTTGAATATAGGATCTCTTATGCAAAAT TTCCCCACTCACCATCGTGA
Product: outer membrane fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT GIQLYSDDAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ
Sequences:
>Translated_792_residues MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT GIQLYSDDAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ >Mature_792_residues MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT GIQLYSDDAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=27.1940667490729, Blast_Score=285, Evalue=8e-78, Organism=Escherichia coli, GI1786332, Length=798, Percent_Identity=25.5639097744361, Blast_Score=167, Evalue=3e-42, Organism=Escherichia coli, GI87081778, Length=800, Percent_Identity=23.625, Blast_Score=126, Evalue=6e-30, Organism=Escherichia coli, GI1786744, Length=302, Percent_Identity=32.1192052980132, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1788427, Length=754, Percent_Identity=23.6074270557029, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1790772, Length=326, Percent_Identity=29.7546012269939, Blast_Score=110, Evalue=4e-25, Organism=Escherichia coli, GI1789533, Length=359, Percent_Identity=27.0194986072423, Blast_Score=107, Evalue=4e-24, Organism=Escherichia coli, GI1787172, Length=322, Percent_Identity=27.9503105590062, Blast_Score=99, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 86948; Mature: 86948
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00061 ADH_SHORT ; PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPG CCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCCCCC QHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVK CCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE LFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIFGQRVESNNSRFNLVQGQFEP ECCCEEEEEEECCHHHCCCCCCCCHHCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC GINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT CCCHHHEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEE GIQLYSDDAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSG EEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC VNTDVSIIEEDGTQQNFTVTSALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEM CCCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC SFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAAASYANTKDAGQGYQFSVQNQ CCCCCEEEEEECCHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCE MTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS EEECCCCCEEEHHHCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEE YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGR EEECCCEEEEECCCEEEEEEECHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEE VQRNNGNVALGSTYQGRWGDNKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNN EEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEHHHHHCCCHHHCCCC SRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIAL CCEEEEECCCCEEEEECEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE LPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD EHHCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCC GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDP CCEEEECCHHCCCCCCEEEEEEECCCEEEECCEEEEEEEEECCCCCCEEEECCCCCCCCH DVLYEVADAVCQ HHHHHHHHHHCC >Mature Secondary Structure MVARCINLQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPG CCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCCCCC QHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVK CCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE LFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIFGQRVESNNSRFNLVQGQFEP ECCCEEEEEEECCHHHCCCCCCCCHHCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC GINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT CCCHHHEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEE GIQLYSDDAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSG EEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC VNTDVSIIEEDGTQQNFTVTSALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEM CCCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC SFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAAASYANTKDAGQGYQFSVQNQ CCCCCEEEEEECCHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCE MTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS EEECCCCCEEEHHHCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEE YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGR EEECCCEEEEECCCEEEEEEECHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEE VQRNNGNVALGSTYQGRWGDNKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNN EEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEHHHHHCCCHHHCCCC SRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIAL CCEEEEECCCCEEEEECEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE LPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD EHHCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCC GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDP CCEEEECCHHCCCCCCEEEEEEECCCEEEECCEEEEEEEEECCCCCCEEEECCCCCCCCH DVLYEVADAVCQ HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]