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The map label for this gene is kdtA

Identifier: 51594410

GI number: 51594410

Start: 62787

End: 64064

Strand: Reverse

Name: kdtA

Synonym: YPTB0052

Alternate gene names: 51594410

Gene position: 64064-62787 (Counterclockwise)

Preceding gene: 51594411

Following gene: 51594409

Centisome position: 1.35

GC content: 50.39

Gene sequence:

>1278_bases
ATGCTGCTGCGTTTATACCAGGTATTACTCTACCTTATTCAACCTCTGATTTGGCTGCGTTTACTATTACGTAGCCGTAA
AGCCCCTGCTTATCGCAAGCGTTGGGGGGAACGCTATGGTTTTTGTGCCGGTAAAGTCGTTGCTGGCGGTATCATGCTGC
ATTCCGTTTCAGTCGGGGAAACACTGGCTGCAATCCCATTGGTCAGAGCATTACGCCACCGTTACCCGTCGCTGCCTATC
ACGGTGACCACGATGACGCCTACCGGCTCAGAGCGCGTCCAGTCTGCTTTTGGTAAAGATGTTCACCACGTTTATTTACC
TTATGATCTCCCCGGCTCTGTGAACCGTTTCCTTGACCAGGTCAATCCCAAACTGGTTATCATCATGGAAACTGAACTTT
GGCCTAACCTGATCAACACTCTGCATCGCCGTAAGATCCCACTGGTTATTGCCAATGCACGTCTTTCTGCCCGCTCTGCG
GCAGGTTACAAGAAGATCGGTAGTTTTATCCGCACTATACTGCAACGGATCACGTTGATTGCGGCACAGAACCAAGAGGA
TGGTGACCGCTTCATCGAACTGGGGCTTAAACGTTCCCAGCTCACCGTGACGGGTAGTCTGAAGTTTGATATTTCTGTCA
CACCGGAGTTGGCAGCCAGAGCGGTGACATTACGCCGCCAATGGGCACCGCACCGCCCCGTTTGGATTGCGACTAGCACA
CATGACGGTGAAGAAACTATCTTGTTGGAAGCCCATCGGCAGCTATTACAACAGTTCCCAACATTGCTACTGATCCTGGT
ACCTCGCCATCCTGAACGCTTCGGAAAGGCCGTTGAATTAACACAAAAGATAGGCTTGAGTTATACATTACGTAGTAAAG
GTGAAGTGCCCTCGAGTAGCACCCAAGTCGTTATCGGCGACACGATGGGTGAGCTGATGCTGCTGTACGGTATTGCCGAC
CTGGCCTTTGTTGGCGGTAGTTTGGTTGAACGTGGCGGTCATAACCCACTGGAAGCAGCGGCTCATGCTATTCCCGTGTT
GATGGGCCCACATACCTTTAACTTTAAAGATATTTGCGCCAAGCTGGAGCAGGCTGAAGGGTTAATTACCGTGACTGATA
CTCTATCGCTGGTAAAAGAAATCACGGTGTTACTGACTGATGAAGATTGCCGCCTCTACTATGGCCGCCACGCGGTTGAT
GTCTTACATGAAAATCAGGGCGCATTACAACGGTTATTACATTTGTTGGAGCCTTATCTGCCACAACGGAGCCACTAA

Upstream 100 bases:

>100_bases
CCACGGCTCAATGTGGTGCTCCGCCCTCCTAGCCGGAAAGAGCCTTTTTTGCCCAGATATGGTATTATTCTTAATAATCC
ATATAAATGAAATTGATAGA

Downstream 100 bases:

>100_bases
ATGGGTACCAAAAAACGTCTGTCGGTGGTGATGATAACCAAGAATGAAGCCTCTCTGCTGACGGACTGTTTAGCATCCGT
GGCCTGGGCTGATGAAATAA

Product: 3-deoxy-D-manno-octulosonic-acid transferase

Products: NA

Alternate protein names: KDO transferase [H]

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MLLRLYQVLLYLIQPLIWLRLLLRSRKAPAYRKRWGERYGFCAGKVVAGGIMLHSVSVGETLAAIPLVRALRHRYPSLPI
TVTTMTPTGSERVQSAFGKDVHHVYLPYDLPGSVNRFLDQVNPKLVIIMETELWPNLINTLHRRKIPLVIANARLSARSA
AGYKKIGSFIRTILQRITLIAAQNQEDGDRFIELGLKRSQLTVTGSLKFDISVTPELAARAVTLRRQWAPHRPVWIATST
HDGEETILLEAHRQLLQQFPTLLLILVPRHPERFGKAVELTQKIGLSYTLRSKGEVPSSSTQVVIGDTMGELMLLYGIAD
LAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICAKLEQAEGLITVTDTLSLVKEITVLLTDEDCRLYYGRHAVD
VLHENQGALQRLLHLLEPYLPQRSH

Sequences:

>Translated_425_residues
MLLRLYQVLLYLIQPLIWLRLLLRSRKAPAYRKRWGERYGFCAGKVVAGGIMLHSVSVGETLAAIPLVRALRHRYPSLPI
TVTTMTPTGSERVQSAFGKDVHHVYLPYDLPGSVNRFLDQVNPKLVIIMETELWPNLINTLHRRKIPLVIANARLSARSA
AGYKKIGSFIRTILQRITLIAAQNQEDGDRFIELGLKRSQLTVTGSLKFDISVTPELAARAVTLRRQWAPHRPVWIATST
HDGEETILLEAHRQLLQQFPTLLLILVPRHPERFGKAVELTQKIGLSYTLRSKGEVPSSSTQVVIGDTMGELMLLYGIAD
LAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICAKLEQAEGLITVTDTLSLVKEITVLLTDEDCRLYYGRHAVD
VLHENQGALQRLLHLLEPYLPQRSH
>Mature_425_residues
MLLRLYQVLLYLIQPLIWLRLLLRSRKAPAYRKRWGERYGFCAGKVVAGGIMLHSVSVGETLAAIPLVRALRHRYPSLPI
TVTTMTPTGSERVQSAFGKDVHHVYLPYDLPGSVNRFLDQVNPKLVIIMETELWPNLINTLHRRKIPLVIANARLSARSA
AGYKKIGSFIRTILQRITLIAAQNQEDGDRFIELGLKRSQLTVTGSLKFDISVTPELAARAVTLRRQWAPHRPVWIATST
HDGEETILLEAHRQLLQQFPTLLLILVPRHPERFGKAVELTQKIGLSYTLRSKGEVPSSSTQVVIGDTMGELMLLYGIAD
LAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICAKLEQAEGLITVTDTLSLVKEITVLLTDEDCRLYYGRHAVD
VLHENQGALQRLLHLLEPYLPQRSH

Specific function: Essential step in lipopolysaccharides biosynthesis. Acts at transfer of 3-deoxy-D-mono octulonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A (lipid IVA). Transfers two molecules of KDO to lipid IVA [H]

COG id: COG1519

COG function: function code M; 3-deoxy-D-manno-octulosonic-acid transferase

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI1790064, Length=425, Percent_Identity=79.7647058823529, Blast_Score=708, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR007507 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF04413 Glycos_transf_N [H]

EC number: 2.-.-.-

Molecular weight: Translated: 47624; Mature: 47624

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRLYQVLLYLIQPLIWLRLLLRSRKAPAYRKRWGERYGFCAGKVVAGGIMLHSVSVGE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHCCCCHHHHHHCHHHEEEECHHH
TLAAIPLVRALRHRYPSLPITVTTMTPTGSERVQSAFGKDVHHVYLPYDLPGSVNRFLDQ
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
VNPKLVIIMETELWPNLINTLHRRKIPLVIANARLSARSAAGYKKIGSFIRTILQRITLI
CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHH
AAQNQEDGDRFIELGLKRSQLTVTGSLKFDISVTPELAARAVTLRRQWAPHRPVWIATST
HCCCCCCCHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEECC
HDGEETILLEAHRQLLQQFPTLLLILVPRHPERFGKAVELTQKIGLSYTLRSKGEVPSSS
CCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCC
TQVVIGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICA
CEEEECCCHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHEEECCCCCCHHHHHH
KLEQAEGLITVTDTLSLVKEITVLLTDEDCRLYYGRHAVDVLHENQGALQRLLHLLEPYL
HHHHCCCCEEEHHHHHHHHHHEEEEECCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHCC
PQRSH
CCCCC
>Mature Secondary Structure
MLLRLYQVLLYLIQPLIWLRLLLRSRKAPAYRKRWGERYGFCAGKVVAGGIMLHSVSVGE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHCCCCHHHHHHCHHHEEEECHHH
TLAAIPLVRALRHRYPSLPITVTTMTPTGSERVQSAFGKDVHHVYLPYDLPGSVNRFLDQ
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
VNPKLVIIMETELWPNLINTLHRRKIPLVIANARLSARSAAGYKKIGSFIRTILQRITLI
CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHH
AAQNQEDGDRFIELGLKRSQLTVTGSLKFDISVTPELAARAVTLRRQWAPHRPVWIATST
HCCCCCCCHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEECC
HDGEETILLEAHRQLLQQFPTLLLILVPRHPERFGKAVELTQKIGLSYTLRSKGEVPSSS
CCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCC
TQVVIGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICA
CEEEECCCHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHEEECCCCCCHHHHHH
KLEQAEGLITVTDTLSLVKEITVLLTDEDCRLYYGRHAVDVLHENQGALQRLLHLLEPYL
HHHHCCCCEEEHHHHHHHHHHEEEEECCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHCC
PQRSH
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferring phosphorus-containing groups [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]