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The map label for this gene is rbn

Identifier: 51594385

GI number: 51594385

Start: 37310

End: 38194

Strand: Direct

Name: rbn

Synonym: YPTB0027

Alternate gene names: 51594385

Gene position: 37310-38194 (Clockwise)

Preceding gene: 51594384

Following gene: 51594386

Centisome position: 0.79

GC content: 47.8

Gene sequence:

>885_bases
ATGGCAAGTTTCCGGCGTTTTCGCTTACTTTCCCCCTTAAAACCCTGTGTCACTTTTGGGCGGATGCTGTACACCCGAAT
TGATAAAGATGGTCTGACGATGCTGGCCGGGCATTTGGCCTATGTTTCGTTGCTCTCTTTGGTCCCCTTGATTACGGTGA
TTTTTGCGTTATTCGCTGCTTTCCCGATGTTTGCTGAGATCAGCATAAAGTTAAAAGCCTTTATATTTGCTAACTTTATG
CCTGCCACGGGTGACATCATCCAAAATTATCTTGAGCAGTTTGTCGCCAACTCCAATCGTATGACCGTGGTAGGCACTTG
TGGTCTGATCGTCACCGCGTTATTACTGATTTACTCCGTCGATAGTGTGCTCAATATTATTTGGCGCAGTAAAATTCAGC
GCTCACTGGTCTTTTCATTTGCAGTTTATTGGATGGTATTGACGCTGGGGCCGATCCTGGTGGGGGCCAGCATGGTTATC
AGTTCGTATTTACTGTCACTACACTGGCTGGCACACGCCAGGGTAGATAGCATGATCGATGAGATATTACGGGTATTTCC
GTTATTGATCTCCTGGGTTTCTTTTTGGCTATTGTATAGCGTGGTGCCCACGGTACGGGTGCCTGCTCGAGATGCGCTTA
TCGGCGCACTGGTAGCTGCATTACTCTTTGAGTTGGGTAAGAAAGGGTTCGCGATGTATATCACGCTGTTTCCCTCTTAT
CAGTTGATTTATGGGGTATTAGCGGTCATTCCCATTTTATTCCTCTGGGTGTACTGGAGTTGGTGCATTGTGTTATTAGG
TGCGGAAATCACCGTGACATTGGGTGAATACCGCGCCGAGCGCCATCACGCGAAGAGCGTCATCACCCAGAGTCCGGAGA
TGTAA

Upstream 100 bases:

>100_bases
ATAATTTCGTGCTCTAATCATTAATGGGTTAGCCTTAGTCGTGCTAACCCTTATCACGCTGGCCCACCCCGAGCTTTATC
GTGTTGACAGAGAGACGAAT

Downstream 100 bases:

>100_bases
GGCATTATGATTGCGTTGATTCAACGGGCGCTTAGCGCCAGTGTCGTGGTCGAAGGGAATATCGTGGGTGAAATTGGCCC
TGGCCTACTGGTATTACTCG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFM
PATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVITQSPEM

Sequences:

>Translated_294_residues
MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFM
PATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVITQSPEM
>Mature_293_residues
ASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFMP
ATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVIS
SYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSYQ
LIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVITQSPEM

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=279, Percent_Identity=69.8924731182796, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y027_YERPS (Q66GF5)

Other databases:

- EMBL:   BX936398
- RefSeq:   YP_068576.1
- GeneID:   2956403
- GenomeReviews:   BX936398_GR
- KEGG:   yps:YPTB0027
- HOGENOM:   HBG451793
- OMA:   FLWIYIS
- ProtClustDB:   PRK01637
- BioCyc:   YPSE273123:YPTB0027-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33102; Mature: 32971

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x15144600)-; HASH(0xb102da4)-; HASH(0x169bcd4c)-; HASH(0xeab0e84)-; HASH(0x167bb884)-; HASH(0x16125594)-; HASH(0x1629ed44)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
CCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
DSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVITQSPEM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure 
ASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
CCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
DSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAALLFELGKKGFAMYITLFPSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVITQSPEM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA